Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_028810.1 Length=52357 Score E Sequences producing significant alignments: (Bits) Value seq18 149 2e-31 seq9 149 2e-31 seq8 82.4 3e-11 >seq18 Length=36757632 Score = 149 bits (164), Expect = 2e-31 Identities = 399/601 (66%), Gaps = 28/601 (5%) Strand=Plus/Plus Query 43684 TCCCGCGTCCAGTCCGTCAGGTCGTACGGATACGTCGGCTTA---------CCGGTCTTC 43734 || |||||||| | |||||||||||| || | |||||||| || ||||| Sbjct 22718134 TCACGCGTCCACTTCGTCAGGTCGTAGGGCTTGGTCGGCTTCGGTGCCTTGCCCTTCTTC 22718193 Query 43735 GCCA---TGAAGTACACGCCGCGCGT--GATC-TCGACGCCGTACAGCTGTTTCAACGCC 43788 ||| ||||||| ||||| | | || | ||||| ||||| | | ||| Sbjct 22718194 CCCACCATGAAGTAGTCGCCGGTCTTCGGAGCCTCGACACCGTAGGTCATCGCGACCGCG 22718253 Query 43789 AGCGCGTACACCGCGAGCTGAAAGTCATCCCCGGGCTTAGCTCCC-GACTTCCAGTCAAC 43847 ||||||||||| ||||||| ||||| || || || || | |||| | ||| |||| Sbjct 22718254 AGCGCGTACACGCCGAGCTGGAAGTCGTCACCCGG-TTGGTTCCCGGTCTTGTAGTCCCG 22718312 Query 43848 GACTTGCACCTCACCGTCGAGCACCAGCACCGCGTCGATGTAGCCGCGGATCTCGATACC 43907 |||| | | ||| ||||||| ||| | || ||||||||||| ||||| | | ||| || Sbjct 22718313 GACTCGAAGCTCCCCGTCGACCACGACGACGGCGTCGATGTATCCGCGAACCAGGATCCC 22718372 Query 43908 GTCGAGCTCGAACTCGATCGCGAGCTCTATCCCCGGGGTGCCGTCCGGTGTGTGCCACAC 43967 ||||||||||| ||||| ||||| ||| | || || |||||||| || ||| | Sbjct 22718373 GTCGAGCTCGATCTCGAAGTACAGCTCGATCGCTGGCGTACCGTCCGGGGTCACCCAGAT 22718432 Query 43968 CTCTAGGCTCGGGTGGTTGTCGATCCAGTCCAGGGTCTTGTCCACCTGCTGGAGCCCTAT 44027 ||| ||| || | | || ||| | | | ||| || ||||||| || || | Sbjct 22718433 CTCCTGGCCCG---GAGTCTCCCGCCACGCGAAGAACTTCTCGACCTGCTCCAGGCCGAC 22718489 Query 44028 ACCCCAGCGACGCTCGATGTCGTCCGCGCCGCGGTACGGCCCGGAGGCGAACCACCAGCC 44087 | || ||||||||||| | ||| |||||| || || |||||| | Sbjct 22718490 GGTGTACCGGCGCTCGATGTCTCGCTGACCGTTGTACGGACCAGACCACGTCCACCACTC 22718549 Query 44088 GAGGTTCGGGGTCTCTTCGGT--AGCTTCGTTGATCCCGTCGGCGTACTCGGCC--TTGA 44143 || |||||||||||| ||||| || || | ||| |||||| | ||| || Sbjct 22718550 GAAGTTCGGGGTCTCCTCGGTGAAGGCTC--CAACGTCGTTGGCGTAGT--GCCAACGGA 22718605 Query 44144 AGATCTCATAGCACTCTTCGCGCGTCAGCGGTGAGCCGGCGAGCTTCGAGAGCATGTATT 44203 | || || | | ||| || |||||||||| |||| | || | | | | | Sbjct 22718606 ACATGTCCTTGGCCTCGTCAAGCGTCAGCGGCATGCCGTAGGACTCCCATACCTCGACCG 22718665 Query 44204 TCTCAGCCACCGCGTGGACCCCGGTACCCTGCTGCAGCCACGCCGCTGGGCGTCTCCACA 44263 |||||| || ||||||| | | || |||||| ||||||| |||||||| || ||||| Sbjct 22718666 CCTCAGCGACAGCGTGGAACGCAGTCCCCTGCGGCAGCCAGGCCGCTGGCCGCTGCCACA 22718725 Query 44264 C 44264 | Sbjct 22718726 C 22718726 >seq9 Length=46179939 Score = 149 bits (164), Expect = 2e-31 Identities = 399/601 (66%), Gaps = 28/601 (5%) Strand=Plus/Minus Query 43684 TCCCGCGTCCAGTCCGTCAGGTCGTACGGATACGTCGGCTTA---------CCGGTCTTC 43734 || |||||||| | |||||||||||| || | |||||||| || ||||| Sbjct 16532210 TCACGCGTCCACTTCGTCAGGTCGTAGGGCTTGGTCGGCTTCGGTGCCTTGCCCTTCTTC 16532151 Query 43735 GCCA---TGAAGTACACGCCGCGCGT--GATC-TCGACGCCGTACAGCTGTTTCAACGCC 43788 ||| ||||||| ||||| | | || | ||||| ||||| | | ||| Sbjct 16532150 CCCACCATGAAGTAGTCGCCGGTCTTCGGAGCCTCGACACCGTAGGTCATCGCGACCGCG 16532091 Query 43789 AGCGCGTACACCGCGAGCTGAAAGTCATCCCCGGGCTTAGCTCCCGA-CTTCCAGTCAAC 43847 ||||||||||| ||||||| ||||| || || || || | ||||| ||| |||| Sbjct 16532090 AGCGCGTACACGCCGAGCTGGAAGTCGTCACCCGG-TTGGTTCCCGGTCTTGTAGTCCCG 16532032 Query 43848 GACTTGCACCTCACCGTCGAGCACCAGCACCGCGTCGATGTAGCCGCGGATCTCGATACC 43907 |||| | | ||| ||||||| ||| | || ||||||||||| ||||| | | ||| || Sbjct 16532031 GACTCGAAGCTCCCCGTCGACCACGACGACGGCGTCGATGTATCCGCGAACCAGGATCCC 16531972 Query 43908 GTCGAGCTCGAACTCGATCGCGAGCTCTATCCCCGGGGTGCCGTCCGGTGTGTGCCACAC 43967 ||||||||||| ||||| ||||| ||| | || || |||||||| || ||| | Sbjct 16531971 GTCGAGCTCGATCTCGAAGTACAGCTCGATCGCTGGCGTACCGTCCGGGGTCACCCAGAT 16531912 Query 43968 CTCTAGGCTCGGGTGGTTGTCGATCCAGTCCAGGGTCTTGTCCACCTGCTGGAGCCCTAT 44027 ||| ||| || | | || ||| | | | ||| || ||||||| || || | Sbjct 16531911 CTCCTGGCCCG---GAGTCTCCCGCCACGCGAAGAACTTCTCGACCTGCTCCAGGCCGAC 16531855 Query 44028 ACCCCAGCGACGCTCGATGTCGTCCGCGCCGCGGTACGGCCCGGAGGCGAACCACCAGCC 44087 | || ||||||||||| | ||| |||||| || || |||||| | Sbjct 16531854 GGTGTACCGGCGCTCGATGTCTCGCTGACCGTTGTACGGACCAGACCACGTCCACCACTC 16531795 Query 44088 GAGGTTCGGGGTCTCTTCGGT--AGCTTCGTTGATCCCGTCGGCGTACTCGGCC--TTGA 44143 || |||||||||||| ||||| || || | ||| |||||| | ||| || Sbjct 16531794 GAAGTTCGGGGTCTCCTCGGTGAAGGCTC--CAACGTCGTTGGCGTAGT--GCCAACGGA 16531739 Query 44144 AGATCTCATAGCACTCTTCGCGCGTCAGCGGTGAGCCGGCGAGCTTCGAGAGCATGTATT 44203 | || || | | ||| || |||||||||| |||| | || | | | | | Sbjct 16531738 ACATGTCCTTGGCCTCGTCAAGCGTCAGCGGCATGCCGTAGGACTCCCATACCTCGACCG 16531679 Query 44204 TCTCAGCCACCGCGTGGACCCCGGTACCCTGCTGCAGCCACGCCGCTGGGCGTCTCCACA 44263 |||||| || ||||||| | | || |||||| ||||||| |||||||| || ||||| Sbjct 16531678 CCTCAGCGACAGCGTGGAACGCAGTCCCCTGCGGCAGCCAGGCCGCTGGCCGCTGCCACA 16531619 Query 44264 C 44264 | Sbjct 16531618 C 16531618 >seq8 Length=24646021 Score = 82.4 bits (90), Expect = 3e-11 Identities = 161/231 (70%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 10447 TTCTACGACTCGCAGCG--GGCTCAGCATCACCCGGATCTCCCTCGTAACGATCGGCCCC 10504 ||||||||||| ||||| | ||| || |||||||| || || || ||||| || | Sbjct 19508608 TTCTACGACTCCCAGCGCAGACTC--CACCACCCGGAGCTTCCCCGCAACGAGAGGTTGC 19508551 Query 10505 TGGAGGGGACGAC-GTTCGAGAAGTTCGTCGAGAACATGGACCCGGCGCGTGAGCGGATG 10563 |||| | | | || ||| ||||||| ||||||||| || || || || || || Sbjct 19508550 -GGAGCGACCTCCAGTGGGAGTGGTTCGTCAGGAACATGGAGCCCGCACGAAAGGGGTTG 19508492 Query 10564 CAGCAGTCGGAGACGCGCGGCGACGCGCTGACCCATCTGACGCTACGCG-CGGTGCGCGA 10622 |||| | || | | | ||| | ||| | ||||| || ||| | |||||||| Sbjct 19508491 TCGCAGGCCGACTCTCCTCAAGCTGCGGTCACCAAGCTGAC-CTTGGCGACAGTGCGCGA 19508433 Query 10623 GGTGGAGAACGCAGGCCGTCAGCAGATCATCCACGCCGTCGAGAACGACCC 10673 ||||||| ||||| || | ||||||||| ||| ||| |||||||||| Sbjct 19508432 AGTGGAGATGGCAGGTCGCCGACAGATCATCGGCGCTGTCAAGAACGACCC 19508382 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 167418064344128