Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_028815.1 Length=51355 Score E Sequences producing significant alignments: (Bits) Value seq18 165 3e-36 seq9 165 3e-36 >seq18 Length=36757632 Score = 165 bits (182), Expect = 3e-36 Identities = 405/603 (67%), Gaps = 32/603 (5%) Strand=Plus/Plus Query 43980 TCCCGCGTCCAGTCCGTCAGGTCGTACGGATACGTCGGCTT---------GCCGGTCTTC 44030 || |||||||| | |||||||||||| || | |||||||| ||| ||||| Sbjct 22718134 TCACGCGTCCACTTCGTCAGGTCGTAGGGCTTGGTCGGCTTCGGTGCCTTGCCCTTCTTC 22718193 Query 44031 GCCA---TGAAGTACACGCCGCGCGT--GATC-TCGACTCCGTACAGCTCTTTCAGG--G 44082 ||| ||||||| ||||| | | || | ||||| ||||| | || | | | Sbjct 22718194 CCCACCATGAAGTAGTCGCCGGTCTTCGGAGCCTCGACACCGTA--GGTCATCGCGACCG 22718251 Query 44083 CCAGCGCGTACACCGCGAGCTGAAAGTCATCTCCGGGCTTAGCTCCC-GACTTCCAGTCA 44141 | ||||||||||| ||||||| ||||| || || || || | |||| | ||| |||| Sbjct 22718252 CGAGCGCGTACACGCCGAGCTGGAAGTCGTCACCCGG-TTGGTTCCCGGTCTTGTAGTCC 22718310 Query 44142 ACGACTTGCACCTCACCGTCGAGCACGAGCACCGCGTCGATGTAGCCGCGGATCTCTATC 44201 |||| | | ||| ||||||| ||||| || ||||||||||| ||||| | | ||| Sbjct 22718311 CGGACTCGAAGCTCCCCGTCGACCACGACGACGGCGTCGATGTATCCGCGAACCAGGATC 22718370 Query 44202 CCATCGAGCTCGAACTCGATCGCGAGCTCTATCCCCGGGGTGCCGTCCGGTGTGTGCCAT 44261 || |||||||||| ||||| ||||| ||| | || || |||||||| || ||| Sbjct 22718371 CCGTCGAGCTCGATCTCGAAGTACAGCTCGATCGCTGGCGTACCGTCCGGGGTCACCCAG 22718430 Query 44262 ACCTCTAGGCTCGGGTGGTTGTCGATCCAGTCCAGGGTCTTGTCCACCTGCTGCAGCCCG 44321 | ||| ||| || | | || ||| | | | ||| || ||||||| ||| ||| Sbjct 22718431 ATCTCCTGGCCCG---GAGTCTCCCGCCACGCGAAGAACTTCTCGACCTGCTCCAGGCCG 22718487 Query 44322 ATACCCCAGCGACGTTCGATGTCGTCCGCGCCGCGGTACGGCCCGGAAGCGAACCACCAG 44381 | | || || |||||||| | ||| |||||| || || |||||| Sbjct 22718488 ACGGTGTACCGGCGCTCGATGTCTCGCTGACCGTTGTACGGACCAGACCACGTCCACCAC 22718547 Query 44382 CCGAGGTTAGGGGTCTCCTCGGT--AGCTTCGTTGATCCCGTCGGCGTACTCGGCC--TT 44437 ||| ||| |||||||||||||| || || | ||| |||||| | ||| Sbjct 22718548 TCGAAGTTCGGGGTCTCCTCGGTGAAGGCTC--CAACGTCGTTGGCGTAGT--GCCAACG 22718603 Query 44438 GAAGATCTCATAGCACTCCTCGCGCGTCAGCGGTGAGCCGGCGAGCTTCGAGAGCATGTA 44497 ||| || || | | ||| || |||||||||| |||| | || | | | | | Sbjct 22718604 GAACATGTCCTTGGCCTCGTCAAGCGTCAGCGGCATGCCGTAGGACTCCCATACCTCGAC 22718663 Query 44498 TTTCTCAGCCACCGCGTGGACCCCGGTACCCTGCTGCAGCCAGGCCGCTGGGCGTTTCCA 44557 |||||| || ||||||| | | || |||||| |||||||||||||||| || | ||| Sbjct 22718664 CGCCTCAGCGACAGCGTGGAACGCAGTCCCCTGCGGCAGCCAGGCCGCTGGCCGCTGCCA 22718723 Query 44558 CAC 44560 ||| Sbjct 22718724 CAC 22718726 >seq9 Length=46179939 Score = 165 bits (182), Expect = 3e-36 Identities = 405/603 (67%), Gaps = 32/603 (5%) Strand=Plus/Minus Query 43980 TCCCGCGTCCAGTCCGTCAGGTCGTACGGATACGTCGGCTT---------GCCGGTCTTC 44030 || |||||||| | |||||||||||| || | |||||||| ||| ||||| Sbjct 16532210 TCACGCGTCCACTTCGTCAGGTCGTAGGGCTTGGTCGGCTTCGGTGCCTTGCCCTTCTTC 16532151 Query 44031 GCCA---TGAAGTACACGCCGCGCGT--GATC-TCGACTCCGTACAGCTCTTTCAGG--G 44082 ||| ||||||| ||||| | | || | ||||| ||||| | || | | | Sbjct 16532150 CCCACCATGAAGTAGTCGCCGGTCTTCGGAGCCTCGACACCGTA--GGTCATCGCGACCG 16532093 Query 44083 CCAGCGCGTACACCGCGAGCTGAAAGTCATCTCCGGGCTTAGCTCCCGA-CTTCCAGTCA 44141 | ||||||||||| ||||||| ||||| || || || || | ||||| ||| |||| Sbjct 16532092 CGAGCGCGTACACGCCGAGCTGGAAGTCGTCACCCGG-TTGGTTCCCGGTCTTGTAGTCC 16532034 Query 44142 ACGACTTGCACCTCACCGTCGAGCACGAGCACCGCGTCGATGTAGCCGCGGATCTCTATC 44201 |||| | | ||| ||||||| ||||| || ||||||||||| ||||| | | ||| Sbjct 16532033 CGGACTCGAAGCTCCCCGTCGACCACGACGACGGCGTCGATGTATCCGCGAACCAGGATC 16531974 Query 44202 CCATCGAGCTCGAACTCGATCGCGAGCTCTATCCCCGGGGTGCCGTCCGGTGTGTGCCAT 44261 || |||||||||| ||||| ||||| ||| | || || |||||||| || ||| Sbjct 16531973 CCGTCGAGCTCGATCTCGAAGTACAGCTCGATCGCTGGCGTACCGTCCGGGGTCACCCAG 16531914 Query 44262 ACCTCTAGGCTCGGGTGGTTGTCGATCCAGTCCAGGGTCTTGTCCACCTGCTGCAGCCCG 44321 | ||| ||| || | | || ||| | | | ||| || ||||||| ||| ||| Sbjct 16531913 ATCTCCTGGCCCG---GAGTCTCCCGCCACGCGAAGAACTTCTCGACCTGCTCCAGGCCG 16531857 Query 44322 ATACCCCAGCGACGTTCGATGTCGTCCGCGCCGCGGTACGGCCCGGAAGCGAACCACCAG 44381 | | || || |||||||| | ||| |||||| || || |||||| Sbjct 16531856 ACGGTGTACCGGCGCTCGATGTCTCGCTGACCGTTGTACGGACCAGACCACGTCCACCAC 16531797 Query 44382 CCGAGGTTAGGGGTCTCCTCGGT--AGCTTCGTTGATCCCGTCGGCGTACTCGGCC--TT 44437 ||| ||| |||||||||||||| || || | ||| |||||| | ||| Sbjct 16531796 TCGAAGTTCGGGGTCTCCTCGGTGAAGGCTC--CAACGTCGTTGGCGTAGT--GCCAACG 16531741 Query 44438 GAAGATCTCATAGCACTCCTCGCGCGTCAGCGGTGAGCCGGCGAGCTTCGAGAGCATGTA 44497 ||| || || | | ||| || |||||||||| |||| | || | | | | | Sbjct 16531740 GAACATGTCCTTGGCCTCGTCAAGCGTCAGCGGCATGCCGTAGGACTCCCATACCTCGAC 16531681 Query 44498 TTTCTCAGCCACCGCGTGGACCCCGGTACCCTGCTGCAGCCAGGCCGCTGGGCGTTTCCA 44557 |||||| || ||||||| | | || |||||| |||||||||||||||| || | ||| Sbjct 16531680 CGCCTCAGCGACAGCGTGGAACGCAGTCCCCTGCGGCAGCCAGGCCGCTGGCCGCTGCCA 16531621 Query 44558 CAC 44560 ||| Sbjct 16531620 CAC 16531618 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 164211716736704