Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_028820.1 Length=162101 Score E Sequences producing significant alignments: (Bits) Value seq82 129 6e-25 >seq82 Length=657493 Score = 129 bits (142), Expect = 6e-25 Identities = 295/439 (67%), Gaps = 4/439 (1%) Strand=Plus/Plus Query 140176 TTAATTTGAACACCATAATCTAGGTGGCGAATACGGTTTTCATCAACACCTTTATTGTTC 140235 |||||||| || ||||||| | ||| || | | ||||| |||| || |||| || Sbjct 460830 TTAATTTGTACTGCATAATCAACGTGACGTACTCTATTTTCTTCAATGCCCCTATTATTT 460889 Query 140236 TTCAGTACGAGCAGGTTTTCTACTTCAAGATGCCAAATCGGATAGTACAAAGTAGCTGCG 140295 || | || | | |||| | ||||| |||||| || ||||| | | ||| || || Sbjct 460890 TTTAAAACTAATAAACTTTCAATTTCAAAATGCCATATTGGATAAAATATAGTTGCCGCT 460949 Query 140296 CCACCGCGAATGCCGCCTTGAGAACAAGATTTAACAGAAGCTAAGTGAGT-TTTCCAGAA 140354 ||||| | || || ||||||||||| ||||| |||| | || | | | ||| | || Sbjct 460950 CCACCTCTAACTCCTCCTTGAGAACAGGATTTTACAGCA-CTTTGAAAATGTTTATAAAA 461008 Query 140355 TGGAATAACGCCTGTATGACGAACTTCACCAGCGCCAATCTTAGAACCTTCAGCACGATA 140414 |||||| || |||||| |||| ||| | ||| | |||| | |||||| Sbjct 461009 AGGAATACAACCAGTATGAAATGCTTCGCCATTTCTAATAGGACTACCTACTGCACGAAT 461068 Query 140415 CATTCCAGCGTTAACACCAATACCGGCACGTTTGCTGATATATTTGATGATTGCTTTGTT 140474 ||||||| |||| |||||| || || |||| | |||||| | || | | | Sbjct 461069 TTTTCCAGCATTAATACCAATTCCTGCTCGTTGAGAAACATATTTTACAATAGAACTAGT 461128 Query 140475 TACTGCATTAATACTGTCAAGACTATCGCCGCCTTCAATAACAACGCAAGAACTGAACTG 140534 || |||||| || ||| |||| | | |||||| | ||| || || || || || Sbjct 461129 AGTAGCGTTAATAGAATCTAGATTATCATCACATTCAATTAAAACACATGAGCTAAATTG 461188 Query 140535 GCGAGTCGGAGTACGTACACCGGCCATAATTGGAGTAGGCAGAGAAA-TCTGACGTTTAG 140593 ||||| ||||| | || || | ||||||||| || || | ||||| | ||| || | Sbjct 461189 TCGAGTAGGAGTTCTAACTCCAGACATAATTGGTGTCGGTAAAGAAATTTTGAAAGTT-G 461247 Query 140594 ATACGGCATTATAGAAACG 140612 | | ||||||||| ||||| Sbjct 461248 AAATGGCATTATAAAAACG 461266 Score = 125 bits (138), Expect = 7e-24 Identities = 260/384 (68%), Gaps = 5/384 (1%) Strand=Plus/Plus Query 135451 TTAATTAATACATCGTCATATAATTTACTAATAGATTCAGCTCGAGCCATGATAGCTTCA 135510 || |||||| |||||||| || | | |||| || ||||||| | | ||| || | Sbjct 459016 TTTATTAAT---TCGTCATAGTATATGCAAATATTTTTAGCTCGATCGTTAATATGTTTA 459072 Query 135511 TCTAGAATAATCTCATCAAAGATTTTACCGGGATCAGAGAACAGATTTCGCATGATATGA 135570 | |||||| |||||||| ||| | ||| | | | ||||| || |||||| Sbjct 459073 TTGGAAATAATATCATCAAATATTAAAGATGGAGAATTAACAATATTTCTAATAATATGA 459132 Query 135571 GTATAAGAACGACTATGGATAGTTTCAGAGAAAGTCCATGTAGCAACCCATGTATCTAAT 135630 ||||||||||| || |||||||| || |||| |||||| ||| ||| || |||||| Sbjct 459133 GTATAAGAACGTGAGTGAATAGTTTCCGAAAAAGACCATGTTTCAATCCAGGTTTCTAAT 459192 Query 135631 GCTGGGTCAGAAATAAGTGGCATCAATACCGACG-AAGGTGCACGACCTTGGATAGTGTC 135689 | || |||||||| ||| | || | | | | ||| | ||||| |||| ||| Sbjct 459193 TCCGGAATAGAAATAATTGGTA-GAAAAGCAATGTTAGGACTTCTTCCTTGAATAGAGTC 459251 Query 135690 TAATAATGACTGATATTTCAAATTATCAACAAAAATATTTTGTTGGTGAGGAAGAAGGCG 135749 |||||||| |||||||| |||||| || |||||||| || || || | | | Sbjct 459252 TAATAATGTTTGATATTTTAAATTACTAAGAAAAATATGTTTTTCATGTTCAGGTAAATT 459311 Query 135750 GTCGAATTGGCCTTTATCTGTCATTAGATTAACTTCTTCAGGTCGCCaaaaaaaTCCAAG 135809 | || | | ||||| |||| | ||||||||||| ||||||||| || Sbjct 459312 TTGAAAATCTATTCTATCTCGAGAGAGATCTATTTCTTCAGGTCTCCAAAAAAAAGAGAG 459371 Query 135810 TTGCTTTTCTGTCAATTCTTCAAA 135833 ||| ||||| | |||| |||||| Sbjct 459372 TTGTTTTTCAATTAATTTTTCAAA 459395 Score = 95.1 bits (104), Expect = 1e-14 Identities = 71/82 (87%), Gaps = 1/82 (1%) Strand=Plus/Minus Query 67173 TAATTTGGTGGCCCTTACTGGATTTGAACCAGTGACCAATCGATTATGAGTCGACTGCTC 67232 || ||| |||||| | ||||||||||||||| |||||| ||||||||||||| |||||| Sbjct 216852 TATTTTAATGGCCCCTGCTGGATTTGAACCAGCGACCAAGCGATTATGAGTCGCCTGCTC 216793 Query 67233 TATCCATCTGAGCTAAAGGGCC 67254 | ||| ||||||||||||||| Sbjct 216792 TTACCA-CTGAGCTAAAGGGCC 216772 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 518586280162560