Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_028827.1 Length=50165 Score E Sequences producing significant alignments: (Bits) Value seq18 93.3 1e-14 >seq18 Length=36757632 Score = 93.3 bits (102), Expect = 1e-14 Identities = 378/577 (66%), Gaps = 24/577 (4%) Strand=Plus/Minus Query 33637 CAACGGTGAGCCGGGGTACTGGAACTCCAGCTACTCCAACGAGGGCGAGGTCGGCACGGT 33696 |||||| ||||||||| ||| || |||| ||||||| || ||| | | ||| Sbjct 22717623 CAACGGCGAGCCGGGGATGTGGGACAGCAGCCTGTCCAACGTCGGTGAGCCCAACGAGGT 22717564 Query 33697 CATCGCGACCAACCCCTGTGGCGAGATCGCCCTGGAGCCGACCGAGAACTGCAACCTCGG 33756 | || |||||||| || || |||||| | ||||||||| ||| ||||||||| || Sbjct 22717563 CGTCTGCACCAACCCGTGCGGGGAGATCACGCTGGAGCCGTGGGAGCCCTGCAACCTAGG 22717504 Query 33757 TCATGTGAACCTGGACTACTTCG-CTCCGCAGGTTCGGGGTGGATGGATCGACCTGGTTC 33815 || | ||||| | |||| | ||| | | ||| || || | || | | Sbjct 22717503 GCACATCAACCTCGCGGCGTTCGTCACCGACG---CCGGGAAGACCGA-CTACATCGA-- 22717450 Query 33816 CCCTGCGTCGGGCTCACCAGCTCATGACCCGCTTCCTGATCCGAGCCACCTACGGCGACG 33875 |||| || || |||| || ||||| || ||||||||||| || || | | | | Sbjct 22717449 -CCTGATCCGAGCCCACCGTCTGATGACGCGGTTCCTGATCCGGGCGACGTTCTCAGCGG 22717391 Query 33876 TGACGGACGCG--GAGCAG-GCGGC-CAAGCTCGCGGCCAACCGGCGCATCGGCGTCGGC 33931 | | || || |||| | | || | | |||| |||||||||||||| || || Sbjct 22717390 TCGCTGATCCGAAGAGCCGAGAGGTTCTGGATCGC----AACCGGCGCATCGGTGTTGGG 22717335 Query 33932 CACCTGGGCGTGCAGGGCTTTCTCGCGAAG-CAGGGCATCCGCTACTCGTCGGC-CCCGT 33989 ||||| || ||| || | | || | |||| | | | || ||| ||| |||| Sbjct 22717334 CACCTCGGAGTGGCCTCCTATTTGGCCCTGACAGGCCGTAGG-TATTCGCAGGCACCCGG 22717276 Query 33990 ACAACGAGAACTTCCGGGCTCGACTCCGGGACATGTACGACACGGTCCGTGAG-GAGGCT 34048 | | | || ||| ||| | ||||| ||| || |||| | || | ||| Sbjct 22717275 AGA-CAAGCGGTTCACCGCTTTCTTGCGGGAGATGGCCGCTGAGGTC-GACAGAGCGGCC 22717218 Query 34049 CGGGAGTAC-GCCTTCCAGCTCCGCATCCCGGAGCCCGTGAAGGTGACGACCGTCGCCCC 34107 ||||| | ||| | || | || ||||||| ||| || ||| | || || ||||| Sbjct 22717217 GAGGAGTTCAGCCATG-AGTTGCGGATCCCGGTGCCGGTCAAGAAGCGCACGGTGGCCCC 22717159 Query 34108 GACCGGCTCGATCGCGAAGCTGCCTGGCGTGAGCGAGGGCATCCACCCGATCTACGCCCG 34167 ||| || | ||||||||| ||||||| || || ||||| ||||||||||||| | |||| Sbjct 22717158 GACAGGGACCATCGCGAAGATGCCTGGAGTCAGTGAGGGTATCCACCCGATCTTCTCCCG 22717099 Query 34168 GACGTTCCTGCGTCGAGTCCGCTTCTCCATGCCGGAC 34204 | ||| | || || |||| ||||| ||| |||| Sbjct 22717098 GTACTTCATCCGGCGCATCCGGTTCTCGGTGCTGGAC 22717062 Score = 89.7 bits (98), Expect = 2e-13 Identities = 73/89 (82%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 33373 CGAGGCCATGGAGATCGACCACGCCATCGCGGAGTGCGTCGTCTCCGGTGGTGTCCGGCG 33432 ||| || |||||||||||||||||||||||| |||| || || |||| ||||| || || Sbjct 22717937 CGATGCGATGGAGATCGACCACGCCATCGCGCAGTGTGTGGTGGCCGGAGGTGTTCGCCG 22717878 Query 33433 CTCGGCTCGCATGGCCATCGTGAAGTGGG 33461 |||||||||||||| || || | |||| Sbjct 22717877 GTCGGCTCGCATGGCGATGATGCACTGGG 22717849 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160403778959424