Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_028828.1 Length=52055 Score E Sequences producing significant alignments: (Bits) Value seq18 149 2e-31 seq9 149 2e-31 seq8 91.5 5e-14 >seq18 Length=36757632 Score = 149 bits (164), Expect = 2e-31 Identities = 400/601 (67%), Gaps = 28/601 (5%) Strand=Plus/Plus Query 45835 TCCCGCGTCCAGTCCGTCAGGTCGTACGGATACGTCGGCTTA---------CCGGTCTTC 45885 || |||||||| | |||||||||||| || | |||||||| || ||||| Sbjct 22718134 TCACGCGTCCACTTCGTCAGGTCGTAGGGCTTGGTCGGCTTCGGTGCCTTGCCCTTCTTC 22718193 Query 45886 GCCA---TGAAGTACACGCCGCGCGT--GATC-TCGACGCCGTACAGCTGTTTCAACGCC 45939 ||| ||||||| ||||| | | || | ||||| ||||| | | ||| Sbjct 22718194 CCCACCATGAAGTAGTCGCCGGTCTTCGGAGCCTCGACACCGTAGGTCATCGCGACCGCG 22718253 Query 45940 AGCGCGTACACCGCGAGCTGGAAGTCATCCCCGGGCTTAGCTCCC-GACTTCCAGTCAAC 45998 ||||||||||| ||||||||||||| || || || || | |||| | ||| |||| Sbjct 22718254 AGCGCGTACACGCCGAGCTGGAAGTCGTCACCCGG-TTGGTTCCCGGTCTTGTAGTCCCG 22718312 Query 45999 GACTTGCACCTCACCGTCGAGCACGAGCACCGCGTCGATGTAGCCCCGGATCTCTATCCC 46058 |||| | | ||| ||||||| ||||| || ||||||||||| || || | | ||||| Sbjct 22718313 GACTCGAAGCTCCCCGTCGACCACGACGACGGCGTCGATGTATCCGCGAACCAGGATCCC 22718372 Query 46059 ATCGAGCTCGAACTCGATCGCGAGCTCTATCCCCGGGGCACCGTCCGGTGTGTGCCACAC 46118 |||||||||| ||||| ||||| ||| | || | ||||||||| || ||| | Sbjct 22718373 GTCGAGCTCGATCTCGAAGTACAGCTCGATCGCTGGCGTACCGTCCGGGGTCACCCAGAT 22718432 Query 46119 CTCTAGGCTCTGGTGGTTGTCGATCCAGTCCAGGGTCTTGTCCACCTGCTGGAGCCCGAT 46178 ||| ||| | || | | || ||| | | | ||| || ||||||| || |||| Sbjct 22718433 CTCCTGGC-CCGGAG--TCTCCCGCCACGCGAAGAACTTCTCGACCTGCTCCAGGCCGAC 22718489 Query 46179 ACCCCATCGACGTTCGATGTCGTCCGCGCCGCGGTATGGCCCGGAGGAGAACCACCAGCC 46238 | || || |||||||| | ||| ||| || || || | |||||| | Sbjct 22718490 GGTGTACCGGCGCTCGATGTCTCGCTGACCGTTGTACGGACCAGACCACGTCCACCACTC 22718549 Query 46239 GAGGTTAGGGGTCTCCTCGGT--AGCTTCGTTGATCCCGTCGGCGTACTCGGCC--TTGA 46294 || ||| |||||||||||||| || || | ||| |||||| | ||| || Sbjct 22718550 GAAGTTCGGGGTCTCCTCGGTGAAGGCTC--CAACGTCGTTGGCGTAGT--GCCAACGGA 22718605 Query 46295 AGATCTCATAGCACTCTTCGCGCGTCAGCGGTGAGCCGGCGAGTTTCGAGAGCATGTATT 46354 | || || | | ||| || |||||||||| |||| | | | | | | | Sbjct 22718606 ACATGTCCTTGGCCTCGTCAAGCGTCAGCGGCATGCCGTAGGACTCCCATACCTCGACCG 22718665 Query 46355 TCTCGGCCACCGCGTGGACCCCAGTACCCTGCTGAAGCCAGGCCGCTGGACGTTTCCACA 46414 ||| || || ||||||| | |||| |||||| | |||||||||||||| || | ||||| Sbjct 22718666 CCTCAGCGACAGCGTGGAACGCAGTCCCCTGCGGCAGCCAGGCCGCTGGCCGCTGCCACA 22718725 Query 46415 C 46415 | Sbjct 22718726 C 22718726 >seq9 Length=46179939 Score = 149 bits (164), Expect = 2e-31 Identities = 400/601 (67%), Gaps = 28/601 (5%) Strand=Plus/Minus Query 45835 TCCCGCGTCCAGTCCGTCAGGTCGTACGGATACGTCGGCTTA---------CCGGTCTTC 45885 || |||||||| | |||||||||||| || | |||||||| || ||||| Sbjct 16532210 TCACGCGTCCACTTCGTCAGGTCGTAGGGCTTGGTCGGCTTCGGTGCCTTGCCCTTCTTC 16532151 Query 45886 GCCA---TGAAGTACACGCCGCGCGT--GATC-TCGACGCCGTACAGCTGTTTCAACGCC 45939 ||| ||||||| ||||| | | || | ||||| ||||| | | ||| Sbjct 16532150 CCCACCATGAAGTAGTCGCCGGTCTTCGGAGCCTCGACACCGTAGGTCATCGCGACCGCG 16532091 Query 45940 AGCGCGTACACCGCGAGCTGGAAGTCATCCCCGGGCTTAGCTCCCGA-CTTCCAGTCAAC 45998 ||||||||||| ||||||||||||| || || || || | ||||| ||| |||| Sbjct 16532090 AGCGCGTACACGCCGAGCTGGAAGTCGTCACCCGG-TTGGTTCCCGGTCTTGTAGTCCCG 16532032 Query 45999 GACTTGCACCTCACCGTCGAGCACGAGCACCGCGTCGATGTAGCCCCGGATCTCTATCCC 46058 |||| | | ||| ||||||| ||||| || ||||||||||| || || | | ||||| Sbjct 16532031 GACTCGAAGCTCCCCGTCGACCACGACGACGGCGTCGATGTATCCGCGAACCAGGATCCC 16531972 Query 46059 ATCGAGCTCGAACTCGATCGCGAGCTCTATCCCCGGGGCACCGTCCGGTGTGTGCCACAC 46118 |||||||||| ||||| ||||| ||| | || | ||||||||| || ||| | Sbjct 16531971 GTCGAGCTCGATCTCGAAGTACAGCTCGATCGCTGGCGTACCGTCCGGGGTCACCCAGAT 16531912 Query 46119 CTCTAGGCTCTGGTGGTTGTCGATCCAGTCCAGGGTCTTGTCCACCTGCTGGAGCCCGAT 46178 ||| ||| | || | | || ||| | | | ||| || ||||||| || |||| Sbjct 16531911 CTCCTGGC-CCGGAG--TCTCCCGCCACGCGAAGAACTTCTCGACCTGCTCCAGGCCGAC 16531855 Query 46179 ACCCCATCGACGTTCGATGTCGTCCGCGCCGCGGTATGGCCCGGAGGAGAACCACCAGCC 46238 | || || |||||||| | ||| ||| || || || | |||||| | Sbjct 16531854 GGTGTACCGGCGCTCGATGTCTCGCTGACCGTTGTACGGACCAGACCACGTCCACCACTC 16531795 Query 46239 GAGGTTAGGGGTCTCCTCGGT--AGCTTCGTTGATCCCGTCGGCGTACTCGGCC--TTGA 46294 || ||| |||||||||||||| || || | ||| |||||| | ||| || Sbjct 16531794 GAAGTTCGGGGTCTCCTCGGTGAAGGCTC--CAACGTCGTTGGCGTAGT--GCCAACGGA 16531739 Query 46295 AGATCTCATAGCACTCTTCGCGCGTCAGCGGTGAGCCGGCGAGTTTCGAGAGCATGTATT 46354 | || || | | ||| || |||||||||| |||| | | | | | | | Sbjct 16531738 ACATGTCCTTGGCCTCGTCAAGCGTCAGCGGCATGCCGTAGGACTCCCATACCTCGACCG 16531679 Query 46355 TCTCGGCCACCGCGTGGACCCCAGTACCCTGCTGAAGCCAGGCCGCTGGACGTTTCCACA 46414 ||| || || ||||||| | |||| |||||| | |||||||||||||| || | ||||| Sbjct 16531678 CCTCAGCGACAGCGTGGAACGCAGTCCCCTGCGGCAGCCAGGCCGCTGGCCGCTGCCACA 16531619 Query 46415 C 46415 | Sbjct 16531618 C 16531618 >seq8 Length=24646021 Score = 91.5 bits (100), Expect = 5e-14 Identities = 163/231 (71%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 11303 TTCTACGACTCGCAGCG--GGCTCAGCACCACCCGGATCTCCCTCGTAACGATCGGCCCC 11360 ||||||||||| ||||| | ||| ||||||||||| || || || ||||| || | Sbjct 19508608 TTCTACGACTCCCAGCGCAGACTC--CACCACCCGGAGCTTCCCCGCAACGAGAGGTTGC 19508551 Query 11361 TGGAGGGGACGAC-GTTCGAGAAGTTCGTCGAGAACATGGACCCGGCTCGTGAGCGGATG 11419 |||| | | | || ||| ||||||| ||||||||| || || || || || || Sbjct 19508550 -GGAGCGACCTCCAGTGGGAGTGGTTCGTCAGGAACATGGAGCCCGCACGAAAGGGGTTG 19508492 Query 11420 CAGCAGGCGGACACCCGCGGGGACGCGCTGACGCACCTGACGCT-GCGAGCCGTCCGCGA 11478 |||||| ||| | | | ||| | || | ||||| | |||| | || ||||| Sbjct 19508491 TCGCAGGCCGACTCTCCTCAAGCTGCGGTCACCAAGCTGACCTTGGCGA-CAGTGCGCGA 19508433 Query 11479 GGTGGAGAACGCAGGCCGCCAGCAGATCATCCACGCCGTCGAGAACGACCC 11529 ||||||| ||||| |||| ||||||||| ||| ||| |||||||||| Sbjct 19508432 AGTGGAGATGGCAGGTCGCCGACAGATCATCGGCGCTGTCAAGAACGACCC 19508382 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 166451680135104