Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_028829.1 Length=248088 Score E Sequences producing significant alignments: (Bits) Value seq82 140 5e-28 >seq82 Length=657493 Score = 140 bits (154), Expect = 5e-28 Identities = 287/423 (68%), Gaps = 8/423 (2%) Strand=Plus/Plus Query 236266 TAGTCAAGATGACGAATACGGTTTTCTTCAACACCTTTGTTGTTCTTCAGAACTAACAGT 236325 || |||| ||||| | | |||||||||| || | || || || | |||||| | Sbjct 460845 TAATCAACGTGACGTACTCTATTTTCTTCAATGCCCCTATTATTTTTTAAAACTAATAAA 460904 Query 236326 TTTTCAACTTCTAAGTGCCAAATCGGGTAAGTTAGAGTCGCAGCACCACCACGTACACCA 236385 |||||| ||| || ||||| || || ||| || ||| || || ||||| | || || Sbjct 460905 CTTTCAATTTCAAAATGCCATATTGGATAAAATATAGTTGCCGCTCCACCTCTAACTCCT 460964 Query 236386 CCTTGAGAACACGATTTAACCGCAGTTTGAAAGTGTTTCCAGAATGGAATTACACCAGTG 236445 ||||||||||| ||||| || ||| ||||||| ||||| | || ||||| |||||| Sbjct 460965 CCTTGAGAACAGGATTTTACAGCACTTTGAAAATGTTTATAAAAAGGAATACAACCAGTA 461024 Query 236446 TGACGAAT--CTCACCTGAACGA--ACGACTGCCCCTTCAGCACGAATCGCACCGCCATT 236501 ||| ||| || || | | | |||| ||| | |||||||| || |||| Sbjct 461025 TGA--AATGCTTCGCCATTTCTAATAGGACT--ACCTACTGCACGAATTTTTCCAGCATT 461080 Query 236502 CACACCGATACCTGCACGCTTACTAATGTAACTTACAATTGATTTAGCCACTTCATTGAT 236561 | ||| || ||||| || | | || || ||||||| || ||| | || || Sbjct 461081 AATACCAATTCCTGCTCGTTGAGAAACATATTTTACAATAGAACTAGTAGTAGCGTTAAT 461140 Query 236562 TGAATGCAAAGAGTCGCCTGATTCAATCTTAACACACGAACTAAACTGGCGTGTCGGGGT 236621 |||| | | || | ||||||| |||||| || ||||| || || || || || Sbjct 461141 AGAATCTAGATTATCATCACATTCAATTAAAACACATGAGCTAAATTGTCGAGTAGGAGT 461200 Query 236622 ACGAACGCCTGCCATAATCGGTGTCGGTAATGAAAGTTTGTGAGTCGAAACTGCATTGTA 236681 | ||| || | |||||| ||||||||||| |||| |||| ||| |||| ||||| || Sbjct 461201 TCTAACTCCAGACATAATTGGTGTCGGTAAAGAAATTTTGAAAGTTGAAATGGCATTATA 461260 Query 236682 GAA 236684 || Sbjct 461261 AAA 461263 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 793739947438080