Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_028843.1 Length=75816 Score E Sequences producing significant alignments: (Bits) Value seq1 91.5 7e-14 >seq1 Length=46747018 Score = 91.5 bits (100), Expect = 7e-14 Identities = 55/58 (95%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 63768 GTAGCTCAACTGGTAGAGCAGTGGTCTCCAAAGCCACCGGTTGCAGGTTCGACTCCTG 63825 ||||||||| ||||||||||||||||||||||||| |||||| ||||||||||||||| Sbjct 34903325 GTAGCTCAATTGGTAGAGCAGTGGTCTCCAAAGCCGCCGGTTCCAGGTTCGACTCCTG 34903268 Score = 87.8 bits (96), Expect = 9e-13 Identities = 293/448 (65%), Gaps = 20/448 (4%) Strand=Plus/Minus Query 64903 CCGGCGAAGTTCGACGTGCTCAATCTGCGCGCGATCTTCCCGTCAAGCTC--CCGCG-AG 64959 |||| |||||||||||| ||||| || || || ||||| |||||| ||||| | Sbjct 34907224 CCGGGGAAGTTCGACGTTCTCAACCTTCGGATGACGTTCCC---AAGCTCATCCGCGTAC 34907168 Query 64960 GGCATCCCTGATCTAGAGCGCTGCGAT-TGGGTCCCGGACGTGCTGGGCGCTTGGCACAT 65018 | ||||| ||||| || | | | | || |||| | || | || ||| |||| Sbjct 34907167 GAGATCCCCGATCTGCGGC-CGACAACCTACGTACCGGCCAACCTCGCGGCCTGGAACAT 34907109 Query 65019 GCCACGCCAGCGCGAGGCTGCGGC----TCGGGAGAACGGCGCGGTCCACTTCTTTCTGG 65074 ||| || || ||||| || || ||||| |||||| | |||||||| || | Sbjct 34907108 GCCGCGACATCGCGAATACGCCGCCGTTTCGGG----CGGCGCACTGCACTTCTTCCTTG 34907053 Query 65075 ACGACTACAGGTTTGAGACGGCGTTTAGC--AGCCCTGAGCGGACCGTGGGGCGAGTTTT 65132 |||||||| | || ||||| ||| | | ||||| ||||| | || || Sbjct 34907052 ACGACTACCGATTCGAGAC--CGTCTGGTCGAGCCCAGAGCGCCTTCTCCCCCGCGTGCA 34906995 Query 65133 GGACGTGGGTGGTGCCCTAGAGCCGAACTTCTCCATTTACTACGACATGCCGCGTGTGGC 65192 | || || | ||| || ||| | ||| | | | |||||||| || | || Sbjct 34906994 AGCGGTTGGAGCTGCTCTGACGCCCGATTTCAGCCTCTGGCGGGACATGCCACGGGCTGC 34906935 Query 65193 GCAGGTTTGGAACACGTACCGGACCCGCTGGTGCGGTGCCTACTGGCAGAGCCAGGGCGT 65252 ||| |||||| ||||| | |||||||||||| || ||||||||| ||||| | Sbjct 34906934 AGCGGTCTGGAACGTCTACCGCAGCCGCTGGTGCGGCGCGTACTGGCAGTCGCAGGGGAT 34906875 Query 65253 GAAGGTCATTCCTACCGTCTGCTGGGCACGCTCAGAGACTTTTGAGTTCGTCTTTGACGG 65312 |||| | || |||| |||||||| | |||| || || || ||| ||| ||||| Sbjct 34906874 CGAGGTGCTCCCAACCGCGTGCTGGGCGACCCCAGACACGTTCGACTTCTGCTTCGACGG 34906815 Query 65313 GATACCGCAGGGCGGCACTGTGGCGCTC 65340 ||| || ||| | ||| || ||| || Sbjct 34906814 GATCCCCGAGGAGGCCACGGTCGCGATC 34906787 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 242482333503072