Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_028861.1 Length=44576 Score E Sequences producing significant alignments: (Bits) Value seq9 111 4e-20 >seq9 Length=46179939 Score = 111 bits (122), Expect = 4e-20 Identities = 254/363 (70%), Gaps = 37/363 (10%) Strand=Plus/Minus Query 29750 GTCCATCGCGCCCGACGTCGTTCGGTCCGCGCTCGACGAACTGCCGGACTCGAAGCTGCT 29809 ||| || ||| || || ||| || | ||||||||||| ||| | || ||||||||||| Sbjct 27699284 GTCGATTCCGCTCGGCGACGTCCGCGCGGCGCTCGACGACCTGTCCGATTCGAAGCTGCT 27699225 Query 29810 GCGGATCGCGGCGACGATCATCGCCGGCTGGAAGCCGATCCTGCTGTCCGCTCACGTCGC 29869 ||||| ||||| ||||||||||||||||| ||||| ||||| | ||| | Sbjct 27699224 CAACATCGCCGCGACCATCATCGCCGGCTGGAAACCGATTCTGCT-CAAGACCAC----C 27699170 Query 29870 GGCG--CTCACGGACCTGGACCTGTTCATCGCCACGCTGCGCGATCGCGCGAACCAGTTC 29927 |||| || || ||| | ||| | | ||| | | |||||||||||||| | ||| | | Sbjct 27699169 GGCGATCTGACCGACGTCGACGTCCTGGTCGACGCTCTGCGCGATCGCGCAACCCAATAC 27699110 Query 29928 GAGGCCGTCGAGCGCGACG-CG-TCCGAACCGTGGCTGTCCACGGACCACCTGATCGACC 29985 | | ||| |||| ||||| || |||| || ||||| |||| | || ||| | Sbjct 27699109 GCCGTCGTAGAGCTCGACGACGTTCCG--CC--GGCTG---ACGG--CGCC---CCGAAC 27699062 Query 29986 ACATGACCCCCCGCAACCGCGGAGAAT-AAGAACGCGGCCGGCGCCCC---AACCCCGGA 30041 | || | || | | ||||| || | | | | ||||||||||||| | ||||| Sbjct 27699061 A----ACTCGCC-CGAACGCGGCGAGTGATGGA--CGGCCGGCGCCCCGCTGATACCGGA 27699009 Query 30042 GCGCCGGCCGCACGACACACCGAAGGATGAGTTCGACATGTCAGAGAACAACGATACGGC 30101 ||||||| | ||||| |||||||| ||||||| |||||| | |||| |||||| Sbjct 27699008 ACGCCGGC--CCTGACAC-CCGAAGGAATAGTTCGA-ATGTCACACGACAA-TCTACGGC 27698954 Query 30102 CGA 30104 ||| Sbjct 27698953 CGA 27698951 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 142519271197056