Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_028874.1 Length=50614 Score E Sequences producing significant alignments: (Bits) Value seq18 181 3e-41 seq9 181 3e-41 seq8 127 7e-25 >seq18 Length=36757632 Score = 181 bits (200), Expect = 3e-41 Identities = 406/601 (68%), Gaps = 28/601 (5%) Strand=Plus/Plus Query 43021 TCCCGCGTCCAGTCCGTCAGGTCGTACGGATACGTCGGCTTA---------CCGGTCTTC 43071 || |||||||| | |||||||||||| || | |||||||| || ||||| Sbjct 22718134 TCACGCGTCCACTTCGTCAGGTCGTAGGGCTTGGTCGGCTTCGGTGCCTTGCCCTTCTTC 22718193 Query 43072 GCCA---TGAAGTACACGCCGCGCGT--GATC-TCGACGCCGTACAGCTGTTTCAACGCC 43125 ||| ||||||| ||||| | | || | ||||| ||||| | | ||| Sbjct 22718194 CCCACCATGAAGTAGTCGCCGGTCTTCGGAGCCTCGACACCGTAGGTCATCGCGACCGCG 22718253 Query 43126 AGCGCGTACACCGCGAGCTGGAAGTCATCCCCGGGCTTAGCTCCC-GACTTCCAGTCAAC 43184 ||||||||||| ||||||||||||| || || || || | |||| | ||| |||| Sbjct 22718254 AGCGCGTACACGCCGAGCTGGAAGTCGTCACCCGG-TTGGTTCCCGGTCTTGTAGTCCCG 22718312 Query 43185 GACTTGCACCTCACCGTCGAGCACCAGCACCGCGTCGATGTAGCCGCGGATCTCGATACC 43244 |||| | | ||| ||||||| ||| | || ||||||||||| ||||| | | ||| || Sbjct 22718313 GACTCGAAGCTCCCCGTCGACCACGACGACGGCGTCGATGTATCCGCGAACCAGGATCCC 22718372 Query 43245 GTCGAGCTCGAACTCGATCGCGAGCTCTATCCCCGGCGTACCGTCCGGTGTGTGCCACAC 43304 ||||||||||| ||||| ||||| ||| | |||||||||||||| || ||| | Sbjct 22718373 GTCGAGCTCGATCTCGAAGTACAGCTCGATCGCTGGCGTACCGTCCGGGGTCACCCAGAT 22718432 Query 43305 CTCTAGGCTCGGGTGGTTGTCGATCCAGTCCAGGGTCTTGTCCACCTGCTGCAGCCCGAT 43364 ||| ||| || | | || ||| | | | ||| || ||||||| ||| |||| Sbjct 22718433 CTCCTGGCCCG---GAGTCTCCCGCCACGCGAAGAACTTCTCGACCTGCTCCAGGCCGAC 22718489 Query 43365 GTCCCATCGACGCTCGATGTCTTCCTGACCTCGGTACCGGCCTGATGCGAACCACCACCC 43424 | | || |||||||||||| |||||| |||| | || || ||||||| | Sbjct 22718490 GGTGTACCGGCGCTCGATGTCTCGCTGACCGTTGTACGGACCAGACCACGTCCACCACTC 22718549 Query 43425 CAGGTTAGGGGTCTCCTCGGT--AGCTTCGTTGATCCCGTCGGCGTACTCGGCC--TTGA 43480 | ||| |||||||||||||| || || | ||| |||||| | ||| || Sbjct 22718550 GAAGTTCGGGGTCTCCTCGGTGAAGGCTC--CAACGTCGTTGGCGTAGT--GCCAACGGA 22718605 Query 43481 AGATCTCATAGCACTCTTCGCGCGTCAGCGGTGAGCCGGCGAGTTTCGAGAGTATGTATT 43540 | || || | | ||| || |||||||||| |||| | | | | | | Sbjct 22718606 ACATGTCCTTGGCCTCGTCAAGCGTCAGCGGCATGCCGTAGGACTCCCATACCTCGACCG 22718665 Query 43541 TCTCAGCCACCGCGTGGACCCCAGTACCCTGCTGAAGCCAGGCCGCTGGGCGTCTCCACA 43600 |||||| || ||||||| | |||| |||||| | |||||||||||||| || ||||| Sbjct 22718666 CCTCAGCGACAGCGTGGAACGCAGTCCCCTGCGGCAGCCAGGCCGCTGGCCGCTGCCACA 22718725 Query 43601 C 43601 | Sbjct 22718726 C 22718726 >seq9 Length=46179939 Score = 181 bits (200), Expect = 3e-41 Identities = 406/601 (68%), Gaps = 28/601 (5%) Strand=Plus/Minus Query 43021 TCCCGCGTCCAGTCCGTCAGGTCGTACGGATACGTCGGCTTA---------CCGGTCTTC 43071 || |||||||| | |||||||||||| || | |||||||| || ||||| Sbjct 16532210 TCACGCGTCCACTTCGTCAGGTCGTAGGGCTTGGTCGGCTTCGGTGCCTTGCCCTTCTTC 16532151 Query 43072 GCCA---TGAAGTACACGCCGCGCGT--GATC-TCGACGCCGTACAGCTGTTTCAACGCC 43125 ||| ||||||| ||||| | | || | ||||| ||||| | | ||| Sbjct 16532150 CCCACCATGAAGTAGTCGCCGGTCTTCGGAGCCTCGACACCGTAGGTCATCGCGACCGCG 16532091 Query 43126 AGCGCGTACACCGCGAGCTGGAAGTCATCCCCGGGCTTAGCTCCCGA-CTTCCAGTCAAC 43184 ||||||||||| ||||||||||||| || || || || | ||||| ||| |||| Sbjct 16532090 AGCGCGTACACGCCGAGCTGGAAGTCGTCACCCGG-TTGGTTCCCGGTCTTGTAGTCCCG 16532032 Query 43185 GACTTGCACCTCACCGTCGAGCACCAGCACCGCGTCGATGTAGCCGCGGATCTCGATACC 43244 |||| | | ||| ||||||| ||| | || ||||||||||| ||||| | | ||| || Sbjct 16532031 GACTCGAAGCTCCCCGTCGACCACGACGACGGCGTCGATGTATCCGCGAACCAGGATCCC 16531972 Query 43245 GTCGAGCTCGAACTCGATCGCGAGCTCTATCCCCGGCGTACCGTCCGGTGTGTGCCACAC 43304 ||||||||||| ||||| ||||| ||| | |||||||||||||| || ||| | Sbjct 16531971 GTCGAGCTCGATCTCGAAGTACAGCTCGATCGCTGGCGTACCGTCCGGGGTCACCCAGAT 16531912 Query 43305 CTCTAGGCTCGGGTGGTTGTCGATCCAGTCCAGGGTCTTGTCCACCTGCTGCAGCCCGAT 43364 ||| ||| || | | || ||| | | | ||| || ||||||| ||| |||| Sbjct 16531911 CTCCTGGCCCG---GAGTCTCCCGCCACGCGAAGAACTTCTCGACCTGCTCCAGGCCGAC 16531855 Query 43365 GTCCCATCGACGCTCGATGTCTTCCTGACCTCGGTACCGGCCTGATGCGAACCACCACCC 43424 | | || |||||||||||| |||||| |||| | || || ||||||| | Sbjct 16531854 GGTGTACCGGCGCTCGATGTCTCGCTGACCGTTGTACGGACCAGACCACGTCCACCACTC 16531795 Query 43425 CAGGTTAGGGGTCTCCTCGGT--AGCTTCGTTGATCCCGTCGGCGTACTCGGCC--TTGA 43480 | ||| |||||||||||||| || || | ||| |||||| | ||| || Sbjct 16531794 GAAGTTCGGGGTCTCCTCGGTGAAGGCTC--CAACGTCGTTGGCGTAGT--GCCAACGGA 16531739 Query 43481 AGATCTCATAGCACTCTTCGCGCGTCAGCGGTGAGCCGGCGAGTTTCGAGAGTATGTATT 43540 | || || | | ||| || |||||||||| |||| | | | | | | Sbjct 16531738 ACATGTCCTTGGCCTCGTCAAGCGTCAGCGGCATGCCGTAGGACTCCCATACCTCGACCG 16531679 Query 43541 TCTCAGCCACCGCGTGGACCCCAGTACCCTGCTGAAGCCAGGCCGCTGGGCGTCTCCACA 43600 |||||| || ||||||| | |||| |||||| | |||||||||||||| || ||||| Sbjct 16531678 CCTCAGCGACAGCGTGGAACGCAGTCCCCTGCGGCAGCCAGGCCGCTGGCCGCTGCCACA 16531619 Query 43601 C 43601 | Sbjct 16531618 C 16531618 >seq8 Length=24646021 Score = 127 bits (140), Expect = 7e-25 Identities = 248/361 (69%), Gaps = 4/361 (1%) Strand=Plus/Minus Query 10525 TTCTACGACTCGCAGCGGGCGCAGCACCACCCGGATCTACCTCGCAACGACCGACCCCTG 10584 ||||||||||| ||||| | ||||||||||| || || |||||||| | | | Sbjct 19508608 TTCTACGACTCCCAGCGCAGACTCCACCACCCGGAGCTTCCCCGCAACGAGAGGTTGC-G 19508550 Query 10585 GAGGGGACGAC-GTTCGAGAAGTTCGTCGAGAACATGGACCCGGCGCGTGAGCGGATGCA 10643 ||| | | | || ||| ||||||| ||||||||| || || || || || || Sbjct 19508549 GAGCGACCTCCAGTGGGAGTGGTTCGTCAGGAACATGGAGCCCGCACGAAAGGGGTTGTC 19508490 Query 10644 GCAGTCGGAGACGCGCGGCGACGCGCTGACCCACCTGACGCTACGCG-CGGTGCGCGAGG 10702 |||| | || | | | ||| | ||| | ||||| || ||| | |||||||| | Sbjct 19508489 GCAGGCCGACTCTCCTCAAGCTGCGGTCACCAAGCTGAC-CTTGGCGACAGTGCGCGAAG 19508431 Query 10703 TGGAGAACGCAGGCCGCCAGCAGATCATCCACGCCGTTGAGAACGACCCGGAACCCCGCG 10762 |||||| ||||| |||| ||||||||| ||| || |||||||||| | || | Sbjct 19508430 TGGAGATGGCAGGTCGCCGACAGATCATCGGCGCTGTCAAGAACGACCCAGCTCCTCAGA 19508371 Query 10763 TCTTGCGGGGCTGGGCTCGCGTCGCGACCGGCAGGGAGACCTGCGCGTGGTGCCTGATGC 10822 || || ||||||||| | ||||| ||||| | || || ||||| ||||| ||||||| Sbjct 19508370 TCGTGAAGGGCTGGGCGAGGGTCGCCACCGGGCGCGAAACATGCGCCTGGTGTCTGATGC 19508311 Query 10823 TGATCAGCCGCGGACCTACGTACGTCCGGGCCGAGACCGCCGGTCTCGACCTTGATACGG 10882 |||| ||| || || |||| | ||| || | || ||||| |||| || || | Sbjct 19508310 TGATTTCCCGTGGCCCCGAGTACCTTTCGGCGGATAGCGGGGGTCTTCACCTCGACACCG 19508251 Query 10883 A 10883 | Sbjct 19508250 A 19508250 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 161840555482112