Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_028890.1 Length=162486 Score E Sequences producing significant alignments: (Bits) Value seq341 219 4e-52 >seq341 Length=107858 Score = 219 bits (242), Expect = 4e-52 Identities = 354/504 (70%), Gaps = 4/504 (1%) Strand=Plus/Minus Query 20116 GAGTCTGCAATTTTGTCTACGTTCCATTTAGCCATATCGCTCTCATTGTCGATGAAACCA 20175 |||| ||||| || ||||| | ||| || | |||||| ||||| |||||||| ||| Sbjct 47299 GAGTTAGCAATATTATCTACATGCCACTTCGACATATCCGCATCATTATCGATGAATCCA 47240 Query 20176 AGCTCGATTAGGATAGCAGGTGCAGACGTGCTGTTTAATACGTAAAGGTCTGTACGAGGT 20235 || ||||||| ||| || ||||| || | | || || || || ||||| | Sbjct 47239 AGTTCGATTAAGATTGCTGGTGCTTTGGTTTCAGTCAGCACATAGAGATCAGTACGCTTT 47180 Query 20236 TTAGCTCCACGGTTAGACCATCCGATGTCGTCAGAAAGCTGTTTAGAAACTTTAGCAGCT 20295 || |||||||| || ||||| ||||| || | ||||| || || ||||| |||||| Sbjct 47179 TTCGCTCCACGATTTGACCAACCGATATCTTTTGAAAGTTGCGCTGATACTTTTGCAGCT 47120 Query 20296 AATGCTTGTTGGTCGTAGTAACAAACCTCTACGCCACTAGCAGAACCGTTGTAAGCATTT 20355 |||||||||||||| || |||||||| || |||||| |||| || | || ||||| Sbjct 47119 AATGCTTGTTGGTCATAATAACAAACTTCCACGCCATTAGCTTTCCCATCATATGCATTC 47060 Query 20356 AAGTGTAATGAAATGTCTAAGTCTACTCGGTGAGCATTACATTTCGCTACGATGTTACGT 20415 || || ||||| || |||| || || |||| ||||||||| ||||| || | Sbjct 47059 AAATGGAATGAGATAACTAAATCAACATCATGAGAATTACATTTACGAACGATATTTGAT 47000 Query 20416 AAG-TTAGCGCTTTGCGTAGAACCTGTTTCGTCTGTGCAGTCATAAACTGTGTGACC-AA 20473 ||| || | || ||| || ||| ||| |||||| |||||||| || ||||| || Sbjct 46999 AAGTTTTGTGC-TTGTGTTCTTCCTACTTCATCTGTGTCATCATAAACCGTATGACCTAA 46941 Query 20474 GGCTACGAAGTTTGCTAATTAAAGCATCTTTGACCTGGCGATCCATAACATGTTCTTTTC 20533 ||| || || ||| | ||||| || || | |||||||||| ||||||||||| Sbjct 46940 AGCTCTTAACTTAGCT-GCAACCGCATCCTTAACAAGACGATCCATAATATGTTCTTTTC 46882 Query 20534 GGTTACCATAGTTAGCACCTTGTACGATAGAGTTGTGACCACCGTGTACGTTATATGTTC 20593 | || || ||||||| |||||||| | | |||||||| |||| |||| | Sbjct 46881 GATTTCCCCAGTTAGCTCCTTGTACAAACTCAGTATGACCACCATGTAAACTATACTTAG 46822 Query 20594 CCATTAAACTTCCACTCCTTTTAA 20617 |||||| | | |||||||||| Sbjct 46821 CCATTATTCAACATCTCCTTTTAA 46798 Score = 219 bits (242), Expect = 4e-52 Identities = 354/504 (70%), Gaps = 4/504 (1%) Strand=Plus/Minus Query 20116 GAGTCTGCAATTTTGTCTACGTTCCATTTAGCCATATCGCTCTCATTGTCGATGAAACCA 20175 |||| ||||| || ||||| | ||| || | |||||| ||||| |||||||| ||| Sbjct 97711 GAGTTAGCAATATTATCTACATGCCACTTCGACATATCCGCATCATTATCGATGAATCCA 97652 Query 20176 AGCTCGATTAGGATAGCAGGTGCAGACGTGCTGTTTAATACGTAAAGGTCTGTACGAGGT 20235 || ||||||| ||| || ||||| || | | || || || || ||||| | Sbjct 97651 AGTTCGATTAAGATTGCTGGTGCTTTGGTTTCAGTCAGCACATAGAGATCAGTACGCTTT 97592 Query 20236 TTAGCTCCACGGTTAGACCATCCGATGTCGTCAGAAAGCTGTTTAGAAACTTTAGCAGCT 20295 || |||||||| || ||||| ||||| || | ||||| || || ||||| |||||| Sbjct 97591 TTCGCTCCACGATTTGACCAACCGATATCTTTTGAAAGTTGCGCTGATACTTTTGCAGCT 97532 Query 20296 AATGCTTGTTGGTCGTAGTAACAAACCTCTACGCCACTAGCAGAACCGTTGTAAGCATTT 20355 |||||||||||||| || |||||||| || |||||| |||| || | || ||||| Sbjct 97531 AATGCTTGTTGGTCATAATAACAAACTTCCACGCCATTAGCTTTCCCATCATATGCATTC 97472 Query 20356 AAGTGTAATGAAATGTCTAAGTCTACTCGGTGAGCATTACATTTCGCTACGATGTTACGT 20415 || || ||||| || |||| || || |||| ||||||||| ||||| || | Sbjct 97471 AAATGGAATGAGATAACTAAATCAACATCATGAGAATTACATTTACGAACGATATTTGAT 97412 Query 20416 AAG-TTAGCGCTTTGCGTAGAACCTGTTTCGTCTGTGCAGTCATAAACTGTGTGACC-AA 20473 ||| || | || ||| || ||| ||| |||||| |||||||| || ||||| || Sbjct 97411 AAGTTTTGTGC-TTGTGTTCTTCCTACTTCATCTGTGTCATCATAAACCGTATGACCTAA 97353 Query 20474 GGCTACGAAGTTTGCTAATTAAAGCATCTTTGACCTGGCGATCCATAACATGTTCTTTTC 20533 ||| || || ||| | ||||| || || | |||||||||| ||||||||||| Sbjct 97352 AGCTCTTAACTTAGCT-GCAACCGCATCCTTAACAAGACGATCCATAATATGTTCTTTTC 97294 Query 20534 GGTTACCATAGTTAGCACCTTGTACGATAGAGTTGTGACCACCGTGTACGTTATATGTTC 20593 | || || ||||||| |||||||| | | |||||||| |||| |||| | Sbjct 97293 GATTTCCCCAGTTAGCTCCTTGTACAAACTCAGTATGACCACCATGTAAACTATACTTAG 97234 Query 20594 CCATTAAACTTCCACTCCTTTTAA 20617 |||||| | | |||||||||| Sbjct 97233 CCATTATTCAACATCTCCTTTTAA 97210 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 519818258972160