Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_028892.1 Length=49949 Score E Sequences producing significant alignments: (Bits) Value seq18 140 1e-28 >seq18 Length=36757632 Score = 140 bits (154), Expect = 1e-28 Identities = 378/576 (66%), Gaps = 22/576 (4%) Strand=Plus/Minus Query 32826 CAACGGCGAGCCGGGGTACTGGAACTCCAGCTACTCCAACGAGGGCGAGGTCGGCACGGT 32885 |||||||||||||||| ||| || |||| ||||||| || ||| | | ||| Sbjct 22717623 CAACGGCGAGCCGGGGATGTGGGACAGCAGCCTGTCCAACGTCGGTGAGCCCAACGAGGT 22717564 Query 32886 CATCGCGACCAACCCGTGCGGTGAGATCGCGCTGGAGCCGACCGAGAACTGCAACCTCGG 32945 | || |||||||||||||| |||||| ||||||||||| ||| ||||||||| || Sbjct 22717563 CGTCTGCACCAACCCGTGCGGGGAGATCACGCTGGAGCCGTGGGAGCCCTGCAACCTAGG 22717504 Query 32946 GCATGTGAACCTGGACTACTTCGCC-CCGAG--CGTGAAGGGCGGCGGCATCCAGAAGGG 33002 ||| | ||||| | |||| | |||| || |||| || | |||| | Sbjct 22717503 GCACATCAACCTCGCGGCGTTCGTCACCGACGCCGGGAAGACCGACTACATCGAC----- 22717449 Query 33003 CAAGCTGCTCCGAGCCCACCAGCTCATGACCCGCTTCCTCATGCGCGCCACCTACGGCGA 33062 ||| |||||||||||| || ||||| || ||||| || || || || | | | Sbjct 22717448 ----CTGATCCGAGCCCACCGTCTGATGACGCGGTTCCTGATCCGGGCGACGTTCTCAGC 22717393 Query 33063 CGTGACGGACGCGGAGCAGGCGGCCAAGCTCGCGA--GCAACCGGCGCATCGGTGTCGGC 33120 || | || || || || | | | || || ||||||||||||||||||| || Sbjct 22717392 GGTCGCTGATCCGAAGA--GCCGAGAGGTTCTGGATCGCAACCGGCGCATCGGTGTTGGG 22717335 Query 33121 CACCTCGGGGTGCAGGGCTTNNNNNNNNNNNNNNNNNNNNGCTACTCGTCGGC-CCCGTA 33179 |||||||| ||| || | || ||| ||| |||| | Sbjct 22717334 CACCTCGGAGTGGCCTCCTATTTGGCCCTGACAGGCCGTAGGTATTCGCAGGCACCCGGA 22717275 Query 33180 CAGC-GAGGTCTTCCGCTGGCTGCTGGAGGATCTGTACGACGCGGTCCGCGAGGAGGCTC 33238 | | ||| ||||| || || ||| || || | |||| | | ||| Sbjct 22717274 GACAAGCGGTTCACCGCTTTCT--TGCGGGAGATGGCCGCTGAGGTCGACAGAGCGGCCG 22717217 Query 33239 GGGAGTAC-GCCTTCCAGCTCCGCATCCCGGAGCCGGTGAAGGTGACGACCGTGGCCCCG 33297 ||||| | ||| | || | || ||||||| |||||| ||| | || ||||||||| Sbjct 22717216 AGGAGTTCAGCCATG-AGTTGCGGATCCCGGTGCCGGTCAAGAAGCGCACGGTGGCCCCG 22717158 Query 33298 ACCGGCTCGATCGCGAAGCTGCCTGGCGTGAGCGAGGGCATCCACCCGATCTACGCCCGG 33357 || || | ||||||||| ||||||| || || ||||| ||||||||||||| | ||||| Sbjct 22717157 ACAGGGACCATCGCGAAGATGCCTGGAGTCAGTGAGGGTATCCACCCGATCTTCTCCCGG 22717098 Query 33358 CACTTCCTGCGTCGCGTGCGCTTCTCCATGCCGGAC 33393 ||||| | || ||| | || ||||| ||| |||| Sbjct 22717097 TACTTCATCCGGCGCATCCGGTTCTCGGTGCTGGAC 22717062 Score = 89.7 bits (98), Expect = 2e-13 Identities = 73/89 (82%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 32562 CGAGGCGATGGAGATCGACCACGCCATCGCGGAGTGTGTCGTCTCGGGTGGTGTCCGGCG 32621 ||| ||||||||||||||||||||||||||| ||||||| || | || ||||| || || Sbjct 22717937 CGATGCGATGGAGATCGACCACGCCATCGCGCAGTGTGTGGTGGCCGGAGGTGTTCGCCG 22717878 Query 32622 CTCGGCGCGCATGGCCATCGTGAAGTGGG 32650 ||||| |||||||| || || | |||| Sbjct 22717877 GTCGGCTCGCATGGCGATGATGCACTGGG 22717849 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 159712590253632