Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15]
1,376 sequences; 930,507,853 total letters
Query= NC_028904.1
Length=49452
Score E
Sequences producing significant alignments: (Bits) Value
seq18 109 2e-19
>seq18
Length=36757632
Score = 109 bits (120), Expect = 2e-19
Identities = 368/564 (65%), Gaps = 23/564 (4%)
Strand=Plus/Minus
Query 35222 AACGGGGAGCCGGGCTACTGGAACAGCTCCCTCTCGAACGAGGGCGAGGTCGGCGAGGTG 35281
||||| |||||||| ||| ||||| ||| || |||| || ||| | ||||||
Sbjct 22717622 AACGGCGAGCCGGGGATGTGGGACAGCAGCCTGTCCAACGTCGGTGAGCCCAACGAGGTC 22717563
Query 35282 ATCGCGACCAACCCCTGCGGCGAGATCGCGCTGGAGGCGTGGGAGAACTGCAACCTCGGG 35341
|| |||||||| ||||| |||||| |||||||| |||||||| ||||||||| |||
Sbjct 22717562 GTCTGCACCAACCCGTGCGGGGAGATCACGCTGGAGCCGTGGGAGCCCTGCAACCTAGGG 22717503
Query 35342 CACGTCAACCTCGATGCGTTCGCTCCGACCGTGAAGGGCGGGGAGTTCGATGAGGCTGGC 35401
||| ||||||||| ||||||| || |||| | | |||| || ||| | | |
Sbjct 22717502 CACATCAACCTCGCGGCGTTCG-TC--ACCG---ACGCCGGGAAGACCGACTACATCGAC 22717449
Query 35402 CTGAAGGAGGCGCACGCTCTCGTCACCCGCTTCCTGATCCGAGCCACCTACGGCGACGTG 35461
|||| || ||| ||| | || || ||||||||||| || || | | | ||
Sbjct 22717448 CTGATCCGAGCCCACCGTCTGATGACGCGGTTCCTGATCCGGGCGACGTTCTCAGCGGTC 22717389
Query 35462 AACGACTCGGGCCAGGCTGCGAAGCTCGCGA--GCAACCGGCGCATCGGTGTCGGCCACC 35519
|| || | || | | || | || || ||||||||||||||||||| || ||||
Sbjct 22717388 GCTGA-TCCGAAGAGCC-GAGAGGTTCTGGATCGCAACCGGCGCATCGGTGTTGGGCACC 22717331
Query 35520 TCGGGGTGCAGGGCTTNNNNNNNNNNNNNNNNNNNNGCTACTCGGTCGC-CCCGTTCTC- 35577
|||| ||| || | || ||| || |||| |
Sbjct 22717330 TCGGAGTGGCCTCCTATTTGGCCCTGACAGGCCGTAGGTATTCGCAGGCACCCGGAGACA 22717271
Query 35578 ----GTTCATGCCGTCGCTCCTGGAGGAGCTGTACGAGACGGTGCGCGAG-GAGGCTCGG 35632
||||| ||| | || || |||| || || ||| || || | ||| |
Sbjct 22717270 AGCGGTTCA--CCG-CTTTCTTGCGGGAGATGGCCGCTGAGGT-CGACAGAGCGGCCGAG 22717215
Query 35633 GACTAC-GCCTTCGAGCTGCGCATCCCGGAGCCGGTCAAGGTCACGACGGTCGCGCCGAC 35691
|| | | ||| | ||| |||| ||||||| |||||||||| ||||| || |||||
Sbjct 22717214 GAGTTCAGCCAT-GAGTTGCGGATCCCGGTGCCGGTCAAGAAGCGCACGGTGGCCCCGAC 22717156
Query 35692 TGGCACGATCGCCAAGATGCCGGGCGTGACGGAGGGCATCCACCCGATCTACGGGCGGAC 35751
|| || ||||| |||||||| || || | ||||| ||||||||||||| | |||
Sbjct 22717155 AGGGACCATCGCGAAGATGCCTGGAGTCAGTGAGGGTATCCACCCGATCTTCTCCCGGTA 22717096
Query 35752 CTACCTGCGTCGAGTCCGCTTCTC 35775
|| | | || || |||| |||||
Sbjct 22717095 CTTCATCCGGCGCATCCGGTTCTC 22717072
Score = 95.1 bits (104), Expect = 4e-15
Identities = 69/80 (86%), Gaps = 0/80 (0%)
Strand=Plus/Minus
Query 34940 CTCGACGCGATGGAGATCGACCACGCCATCGCCGAGTGCGTGGTGTCCGGTGGCGTCCGA 34999
||||| |||||||||||||||||||||||||| |||| |||||| |||| || || ||
Sbjct 22717939 CTCGATGCGATGGAGATCGACCACGCCATCGCGCAGTGTGTGGTGGCCGGAGGTGTTCGC 22717880
Query 35000 CGTTCGGCCCGCATGGCGAT 35019
|| ||||| |||||||||||
Sbjct 22717879 CGGTCGGCTCGCATGGCGAT 22717860
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 158122216240768
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |