Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_028904.1 Length=49452 Score E Sequences producing significant alignments: (Bits) Value seq18 109 2e-19 >seq18 Length=36757632 Score = 109 bits (120), Expect = 2e-19 Identities = 368/564 (65%), Gaps = 23/564 (4%) Strand=Plus/Minus Query 35222 AACGGGGAGCCGGGCTACTGGAACAGCTCCCTCTCGAACGAGGGCGAGGTCGGCGAGGTG 35281 ||||| |||||||| ||| ||||| ||| || |||| || ||| | |||||| Sbjct 22717622 AACGGCGAGCCGGGGATGTGGGACAGCAGCCTGTCCAACGTCGGTGAGCCCAACGAGGTC 22717563 Query 35282 ATCGCGACCAACCCCTGCGGCGAGATCGCGCTGGAGGCGTGGGAGAACTGCAACCTCGGG 35341 || |||||||| ||||| |||||| |||||||| |||||||| ||||||||| ||| Sbjct 22717562 GTCTGCACCAACCCGTGCGGGGAGATCACGCTGGAGCCGTGGGAGCCCTGCAACCTAGGG 22717503 Query 35342 CACGTCAACCTCGATGCGTTCGCTCCGACCGTGAAGGGCGGGGAGTTCGATGAGGCTGGC 35401 ||| ||||||||| ||||||| || |||| | | |||| || ||| | | | Sbjct 22717502 CACATCAACCTCGCGGCGTTCG-TC--ACCG---ACGCCGGGAAGACCGACTACATCGAC 22717449 Query 35402 CTGAAGGAGGCGCACGCTCTCGTCACCCGCTTCCTGATCCGAGCCACCTACGGCGACGTG 35461 |||| || ||| ||| | || || ||||||||||| || || | | | || Sbjct 22717448 CTGATCCGAGCCCACCGTCTGATGACGCGGTTCCTGATCCGGGCGACGTTCTCAGCGGTC 22717389 Query 35462 AACGACTCGGGCCAGGCTGCGAAGCTCGCGA--GCAACCGGCGCATCGGTGTCGGCCACC 35519 || || | || | | || | || || ||||||||||||||||||| || |||| Sbjct 22717388 GCTGA-TCCGAAGAGCC-GAGAGGTTCTGGATCGCAACCGGCGCATCGGTGTTGGGCACC 22717331 Query 35520 TCGGGGTGCAGGGCTTNNNNNNNNNNNNNNNNNNNNGCTACTCGGTCGC-CCCGTTCTC- 35577 |||| ||| || | || ||| || |||| | Sbjct 22717330 TCGGAGTGGCCTCCTATTTGGCCCTGACAGGCCGTAGGTATTCGCAGGCACCCGGAGACA 22717271 Query 35578 ----GTTCATGCCGTCGCTCCTGGAGGAGCTGTACGAGACGGTGCGCGAG-GAGGCTCGG 35632 ||||| ||| | || || |||| || || ||| || || | ||| | Sbjct 22717270 AGCGGTTCA--CCG-CTTTCTTGCGGGAGATGGCCGCTGAGGT-CGACAGAGCGGCCGAG 22717215 Query 35633 GACTAC-GCCTTCGAGCTGCGCATCCCGGAGCCGGTCAAGGTCACGACGGTCGCGCCGAC 35691 || | | ||| | ||| |||| ||||||| |||||||||| ||||| || ||||| Sbjct 22717214 GAGTTCAGCCAT-GAGTTGCGGATCCCGGTGCCGGTCAAGAAGCGCACGGTGGCCCCGAC 22717156 Query 35692 TGGCACGATCGCCAAGATGCCGGGCGTGACGGAGGGCATCCACCCGATCTACGGGCGGAC 35751 || || ||||| |||||||| || || | ||||| ||||||||||||| | ||| Sbjct 22717155 AGGGACCATCGCGAAGATGCCTGGAGTCAGTGAGGGTATCCACCCGATCTTCTCCCGGTA 22717096 Query 35752 CTACCTGCGTCGAGTCCGCTTCTC 35775 || | | || || |||| ||||| Sbjct 22717095 CTTCATCCGGCGCATCCGGTTCTC 22717072 Score = 95.1 bits (104), Expect = 4e-15 Identities = 69/80 (86%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 34940 CTCGACGCGATGGAGATCGACCACGCCATCGCCGAGTGCGTGGTGTCCGGTGGCGTCCGA 34999 ||||| |||||||||||||||||||||||||| |||| |||||| |||| || || || Sbjct 22717939 CTCGATGCGATGGAGATCGACCACGCCATCGCGCAGTGTGTGGTGGCCGGAGGTGTTCGC 22717880 Query 35000 CGTTCGGCCCGCATGGCGAT 35019 || ||||| ||||||||||| Sbjct 22717879 CGGTCGGCTCGCATGGCGAT 22717860 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 158122216240768