Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_028920.1 Length=52530 Score E Sequences producing significant alignments: (Bits) Value seq18 149 2e-31 seq9 149 2e-31 >seq18 Length=36757632 Score = 149 bits (164), Expect = 2e-31 Identities = 400/601 (67%), Gaps = 28/601 (5%) Strand=Plus/Plus Query 44856 TCCCGCGTCCAGTCCGTCAGGTCGTACGGATACGTCGGCTTA---------CCGGTCTTC 44906 || |||||||| | |||||||||||| || | |||||||| || ||||| Sbjct 22718134 TCACGCGTCCACTTCGTCAGGTCGTAGGGCTTGGTCGGCTTCGGTGCCTTGCCCTTCTTC 22718193 Query 44907 GCCA---TGAAGTACACGCCGCGCGT--GATC-TCGACGCCGTACAGCTGTTTCAACGCC 44960 ||| ||||||| ||||| | | || | ||||| ||||| | | ||| Sbjct 22718194 CCCACCATGAAGTAGTCGCCGGTCTTCGGAGCCTCGACACCGTAGGTCATCGCGACCGCG 22718253 Query 44961 AGCGCGTACACCGCGAGCTGGAAGTCATCCCCGGGCTTAGCTCCC-GACTTCCAGTCAAC 45019 ||||||||||| ||||||||||||| || || || || | |||| | ||| |||| Sbjct 22718254 AGCGCGTACACGCCGAGCTGGAAGTCGTCACCCGG-TTGGTTCCCGGTCTTGTAGTCCCG 22718312 Query 45020 GACTTGCACCTCACCGTCGAGCACCAGCACCGCGTCGATGTAGCCCCGGATCTCTATCCC 45079 |||| | | ||| ||||||| ||| | || ||||||||||| || || | | ||||| Sbjct 22718313 GACTCGAAGCTCCCCGTCGACCACGACGACGGCGTCGATGTATCCGCGAACCAGGATCCC 22718372 Query 45080 ATCGAGCTCGAACTCGATCGCGAGCTCTATCCCCGGGGCACCGTCCGGTGTGTGCCACAC 45139 |||||||||| ||||| ||||| ||| | || | ||||||||| || ||| | Sbjct 22718373 GTCGAGCTCGATCTCGAAGTACAGCTCGATCGCTGGCGTACCGTCCGGGGTCACCCAGAT 22718432 Query 45140 CTCTAGGCTCTGGTGGTTGTCGATCCAGTCCAGGGTCTTGTCCACCTGCTGGAGCCCGAT 45199 ||| ||| | || | | || ||| | | | ||| || ||||||| || |||| Sbjct 22718433 CTCCTGGC-CCGGAG--TCTCCCGCCACGCGAAGAACTTCTCGACCTGCTCCAGGCCGAC 22718489 Query 45200 ACCCCAGCGACGTTCGATGTCGTCCGCGCCGCGGTACGGCCCGGAGGCGAACCACCAGCC 45259 | || || |||||||| | ||| |||||| || || |||||| | Sbjct 22718490 GGTGTACCGGCGCTCGATGTCTCGCTGACCGTTGTACGGACCAGACCACGTCCACCACTC 22718549 Query 45260 GAGGTTCGGGGTCTCCTCGGT--AGCTTCGTTGATCCCGTCGGCGTACTCGGCC--TTGA 45315 || |||||||||||||||||| || || | ||| |||||| | ||| || Sbjct 22718550 GAAGTTCGGGGTCTCCTCGGTGAAGGCTC--CAACGTCGTTGGCGTAGT--GCCAACGGA 22718605 Query 45316 AGATCTCATAGCACTCTTCGCGCGTCAGCGGTGAGCCGGCGAGTTTCGAGAGCATGTATT 45375 | || || | | ||| || |||||||||| |||| | | | | | | | Sbjct 22718606 ACATGTCCTTGGCCTCGTCAAGCGTCAGCGGCATGCCGTAGGACTCCCATACCTCGACCG 22718665 Query 45376 TCTCAGCCACCGCGTGAACCCCGGTACCCTGCTGCAGCCAGGCCGCTGGGCGTTTCCACA 45435 |||||| || ||||| | | | || |||||| |||||||||||||||| || | ||||| Sbjct 22718666 CCTCAGCGACAGCGTGGAACGCAGTCCCCTGCGGCAGCCAGGCCGCTGGCCGCTGCCACA 22718725 Query 45436 C 45436 | Sbjct 22718726 C 22718726 >seq9 Length=46179939 Score = 149 bits (164), Expect = 2e-31 Identities = 400/601 (67%), Gaps = 28/601 (5%) Strand=Plus/Minus Query 44856 TCCCGCGTCCAGTCCGTCAGGTCGTACGGATACGTCGGCTTA---------CCGGTCTTC 44906 || |||||||| | |||||||||||| || | |||||||| || ||||| Sbjct 16532210 TCACGCGTCCACTTCGTCAGGTCGTAGGGCTTGGTCGGCTTCGGTGCCTTGCCCTTCTTC 16532151 Query 44907 GCCA---TGAAGTACACGCCGCGCGT--GATC-TCGACGCCGTACAGCTGTTTCAACGCC 44960 ||| ||||||| ||||| | | || | ||||| ||||| | | ||| Sbjct 16532150 CCCACCATGAAGTAGTCGCCGGTCTTCGGAGCCTCGACACCGTAGGTCATCGCGACCGCG 16532091 Query 44961 AGCGCGTACACCGCGAGCTGGAAGTCATCCCCGGGCTTAGCTCCCGA-CTTCCAGTCAAC 45019 ||||||||||| ||||||||||||| || || || || | ||||| ||| |||| Sbjct 16532090 AGCGCGTACACGCCGAGCTGGAAGTCGTCACCCGG-TTGGTTCCCGGTCTTGTAGTCCCG 16532032 Query 45020 GACTTGCACCTCACCGTCGAGCACCAGCACCGCGTCGATGTAGCCCCGGATCTCTATCCC 45079 |||| | | ||| ||||||| ||| | || ||||||||||| || || | | ||||| Sbjct 16532031 GACTCGAAGCTCCCCGTCGACCACGACGACGGCGTCGATGTATCCGCGAACCAGGATCCC 16531972 Query 45080 ATCGAGCTCGAACTCGATCGCGAGCTCTATCCCCGGGGCACCGTCCGGTGTGTGCCACAC 45139 |||||||||| ||||| ||||| ||| | || | ||||||||| || ||| | Sbjct 16531971 GTCGAGCTCGATCTCGAAGTACAGCTCGATCGCTGGCGTACCGTCCGGGGTCACCCAGAT 16531912 Query 45140 CTCTAGGCTCTGGTGGTTGTCGATCCAGTCCAGGGTCTTGTCCACCTGCTGGAGCCCGAT 45199 ||| ||| | || | | || ||| | | | ||| || ||||||| || |||| Sbjct 16531911 CTCCTGGC-CCGGAG--TCTCCCGCCACGCGAAGAACTTCTCGACCTGCTCCAGGCCGAC 16531855 Query 45200 ACCCCAGCGACGTTCGATGTCGTCCGCGCCGCGGTACGGCCCGGAGGCGAACCACCAGCC 45259 | || || |||||||| | ||| |||||| || || |||||| | Sbjct 16531854 GGTGTACCGGCGCTCGATGTCTCGCTGACCGTTGTACGGACCAGACCACGTCCACCACTC 16531795 Query 45260 GAGGTTCGGGGTCTCCTCGGT--AGCTTCGTTGATCCCGTCGGCGTACTCGGCC--TTGA 45315 || |||||||||||||||||| || || | ||| |||||| | ||| || Sbjct 16531794 GAAGTTCGGGGTCTCCTCGGTGAAGGCTC--CAACGTCGTTGGCGTAGT--GCCAACGGA 16531739 Query 45316 AGATCTCATAGCACTCTTCGCGCGTCAGCGGTGAGCCGGCGAGTTTCGAGAGCATGTATT 45375 | || || | | ||| || |||||||||| |||| | | | | | | | Sbjct 16531738 ACATGTCCTTGGCCTCGTCAAGCGTCAGCGGCATGCCGTAGGACTCCCATACCTCGACCG 16531679 Query 45376 TCTCAGCCACCGCGTGAACCCCGGTACCCTGCTGCAGCCAGGCCGCTGGGCGTTTCCACA 45435 |||||| || ||||| | | | || |||||| |||||||||||||||| || | ||||| Sbjct 16531678 CCTCAGCGACAGCGTGGAACGCAGTCCCCTGCGGCAGCCAGGCCGCTGGCCGCTGCCACA 16531619 Query 45436 C 45436 | Sbjct 16531618 C 16531618 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 167971655298304