Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_028922.1 Length=45161 Score E Sequences producing significant alignments: (Bits) Value seq9 109 2e-19 >seq9 Length=46179939 Score = 109 bits (120), Expect = 2e-19 Identities = 230/331 (69%), Gaps = 28/331 (8%) Strand=Plus/Minus Query 30458 GCGCTCGACGAACTGCCGGACTCGAAGCTGCTGCGGATCGCGGCGACCATCATCGCCGGC 30517 ||||||||||| ||| | || ||||||||||| ||||| |||||||||||||||||| Sbjct 27699256 GCGCTCGACGACCTGTCCGATTCGAAGCTGCTCAACATCGCCGCGACCATCATCGCCGGC 27699197 Query 30518 TGGAAGCCGATCCTGCTGTCCGCGCAACTGGCCGCACTCACTGACCTGGACCTGTTCATC 30577 ||||| ||||| |||| || | || || || || || ||| | ||| | | || Sbjct 27699196 TGGAAACCGATTCTGC--TCAAGACCACCGG-CGATCTGACCGACGTCGACGTCCTGGTC 27699140 Query 30578 GCGGCGCTGCGCGACCGTGCGAACCAGTTCGAGGCCGTCGAGCGCGACGCCGGCGAACCG 30637 | || |||||||| || || | ||| | || | ||| |||| ||||| || || Sbjct 27699139 GACGCTCTGCGCGATCGCGCAACCCAATACGCCGTCGTAGAGCTCGACGACGTTCCGCC- 27699081 Query 30638 TGGCTGTCCACCGATCACCTGCTGGAACACCTGAACCCCCGCACCCGCGGAGAATGAGAA 30697 ||||| || | | || ||||| || | |||| | ||||| || ||| Sbjct 27699080 -GGCTG---ACGGCGCCCC-----GAACAACT---CGCCCGAA--CGCGGCGAGTGATGG 27699035 Query 30698 ACGCGGCCGGCGCCCC---AACCCCGGAGCACCGGCCGCACGACACACCGAAGGATGAGT 30754 | ||||||||||||| | ||||| | ||||| | ||||| |||||||| ||| Sbjct 27699034 A--CGGCCGGCGCCCCGCTGATACCGGAACGCCGGC--CCTGACAC-CCGAAGGAATAGT 27698980 Query 30755 TCGACATGTCAGAGAACAACCTACGCGCCGA 30785 |||| |||||| | |||| ||||| ||||| Sbjct 27698979 TCGA-ATGTCACACGACAATCTACG-GCCGA 27698951 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 144391240608576