Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_028927.1 Length=167298 Score E Sequences producing significant alignments: (Bits) Value seq82 219 5e-52 >seq82 Length=657493 Score = 219 bits (242), Expect = 5e-52 Identities = 329/463 (71%), Gaps = 12/463 (3%) Strand=Plus/Plus Query 43561 ATTCAGTTGAACACCATAATCCATATGACGAATGCGGTTTTCTTCTACACCTTTGTTATT 43620 ||| | ||| || ||||||| | ||||| | | |||||||| | || | ||||| Sbjct 460829 ATTAATTTGTACTGCATAATCAACGTGACGTACTCTATTTTCTTCAATGCCCCTATTATT 460888 Query 43621 TTTCAAAACAAGAAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGCAGTAGCAGC 43680 ||| ||||| | | | |||||| ||| |||||||| || |||||| | ||| || || Sbjct 460889 TTTTAAAACTAATAAACTTTCAATTTCAAAATGCCATATTGGATAAAATATAGTTGCCGC 460948 Query 43681 GCCGCCACGAATTCCACCTTGTGAGCATGATTTAACAGCAGTCTGAAAATGTTTCCAAAA 43740 || || | || ||| ||||| || || ||||| |||||| | ||||||||||| |||| Sbjct 460949 TCCACCTCTAACTCCTCCTTGAGAACAGGATTTTACAGCACTTTGAAAATGTTTATAAAA 461008 Query 43741 AGGAATAACACCAGTATGGCGTACTTCACCCATGCCAATCTTAGAACCTTCGGCACGAAT 43800 ||||||| ||||||||| | |||| || | | ||| | |||| | |||||||| Sbjct 461009 AGGAATACAACCAGTATGAAATGCTTCGCCATTTCTAATAGGACTACCTACTGCACGAAT 461068 Query 43801 CATACCAACGTTAATACCAATTCCAGCACGTTTGGAGATATATTCAACAATTGA---AGC 43857 | ||| | |||||||||||||| || |||| || | ||||| ||||| || || Sbjct 461069 TTTTCCAGCATTAATACCAATTCCTGCTCGTTGAGAAACATATTTTACAATAGAACTAGT 461128 Query 43858 GGAAGCCTTATTGATAGACTTTA-ATGA--ATCACCTGCCTCAATAACAACACATGAACT 43914 | ||| ||| ||||| | || || | ||||| | ||||| | ||||||||| || Sbjct 461129 AGTAGCGTTA---ATAGAATCTAGATTATCATCACAT---TCAATTAAAACACATGAGCT 461182 Query 43915 AAACTGTCGAGTCGGAGTACGACAACCAGCCATAATAGGAGTTGGTAATGAAATCTGTCG 43974 ||| |||||||| ||||| | | |||| |||||| || || ||||| ||||| | Sbjct 461183 AAATTGTCGAGTAGGAGTTCTAACTCCAGACATAATTGGTGTCGGTAAAGAAATTTTGAA 461242 Query 43975 AGTAGATACTGCTTCATAAAAACGGATAACGTGTTTTAATCTA 44017 ||| || | || | ||||||||| ||||| || | |||| Sbjct 461243 AGTTGAAATGGCATTATAAAAACGCTGAACGTAATTCATTCTA 461285 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 535216394119680