Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_028928.1 Length=53455 Score E Sequences producing significant alignments: (Bits) Value seq18 158 4e-34 seq9 158 4e-34 >seq18 Length=36757632 Score = 158 bits (174), Expect = 4e-34 Identities = 402/601 (67%), Gaps = 28/601 (5%) Strand=Plus/Plus Query 46104 TCCCGCGTCCAGTCCGTCAGGTCGTACGGATACGTCGGCTTA---------CCGGTCTTC 46154 || |||||||| | |||||||||||| || | |||||||| || ||||| Sbjct 22718134 TCACGCGTCCACTTCGTCAGGTCGTAGGGCTTGGTCGGCTTCGGTGCCTTGCCCTTCTTC 22718193 Query 46155 GCCA---TGAAGTACACGCCGCGCGT--GATC-TCGACGCCGTACAGCTGTTTCAACGCC 46208 ||| ||||||| ||||| | | || | ||||| ||||| | | ||| Sbjct 22718194 CCCACCATGAAGTAGTCGCCGGTCTTCGGAGCCTCGACACCGTAGGTCATCGCGACCGCG 22718253 Query 46209 AGCGCGTACACCGCGAGCTGAAAGTCATCTCCGGGCTTGAGTCCGGACTTCCAGTCGACC 46268 ||||||||||| ||||||| ||||| || || || | | |||| ||| |||| Sbjct 22718254 AGCGCGTACACGCCGAGCTGGAAGTCGTCACCCGGTTGGTTCCCGGTCTTGTAGTCCCGG 22718313 Query 46269 ACCATCACCTCACCGTCGAGCACGAGCACCGCGTCGATGTAGCCCCGGATCTCTATCCCA 46328 || | ||| ||||||| ||||| || ||||||||||| || || | | ||||| Sbjct 22718314 ACTCGAAGCTCCCCGTCGACCACGACGACGGCGTCGATGTATCCGCGAACCAGGATCCCG 22718373 Query 46329 TCGAGTTCGAACTCGATCGCGAGCTCTATCCCCGGGGTACCGTCCGGTGTGTGCCACACC 46388 ||||| |||| ||||| ||||| ||| | || ||||||||||| || ||| | | Sbjct 22718374 TCGAGCTCGATCTCGAAGTACAGCTCGATCGCTGGCGTACCGTCCGGGGTCACCCAGATC 22718433 Query 46389 TCTAGGCTCTGGTGGTTGTCGATCCAGTCCAGGGTCTTGTCCACCTGCTGCAGCCCGATA 46448 || ||| | || | | || ||| | | | ||| || ||||||| ||| |||| Sbjct 22718434 TCCTGGC-CCGGAG--TCTCCCGCCACGCGAAGAACTTCTCGACCTGCTCCAGGCCGACG 22718490 Query 46449 CCCCAGCGACGCTCGATGTCGTCAGCG-CCGCGGTACGGCCCGGAGGAGAACCACCAGCC 46507 | || ||||||||||| || | ||| |||||| || || | |||||| | Sbjct 22718491 GTGTACCGGCGCTCGATGTC-TCGCTGACCGTTGTACGGACCAGACCACGTCCACCACTC 22718549 Query 46508 GAGGTTAGGGGTCTCCTCGGT--AGCTTCGTTGATCCCATCGGCGTACTCGGCC--TTGA 46563 || ||| |||||||||||||| || || | | | |||||| | ||| || Sbjct 22718550 GAAGTTCGGGGTCTCCTCGGTGAAGGCTC--CAACGTCGTTGGCGTAGT--GCCAACGGA 22718605 Query 46564 AGATCTCATAGCACTCTTCGCGCGTCAGCGGTGAGCCGGCGAGCTTCGATAGCATGTATT 46623 | || || | | ||| || |||||||||| |||| | || | ||| | | Sbjct 22718606 ACATGTCCTTGGCCTCGTCAAGCGTCAGCGGCATGCCGTAGGACTCCCATACCTCGACCG 22718665 Query 46624 TCTCAGCCACCGCGTGGACCCCAGTACCCTGCTGCAGCCAGGCCGCTGGGCGTTTCCACA 46683 |||||| || ||||||| | |||| |||||| |||||||||||||||| || | ||||| Sbjct 22718666 CCTCAGCGACAGCGTGGAACGCAGTCCCCTGCGGCAGCCAGGCCGCTGGCCGCTGCCACA 22718725 Query 46684 C 46684 | Sbjct 22718726 C 22718726 >seq9 Length=46179939 Score = 158 bits (174), Expect = 4e-34 Identities = 402/601 (67%), Gaps = 28/601 (5%) Strand=Plus/Minus Query 46104 TCCCGCGTCCAGTCCGTCAGGTCGTACGGATACGTCGGCTTA---------CCGGTCTTC 46154 || |||||||| | |||||||||||| || | |||||||| || ||||| Sbjct 16532210 TCACGCGTCCACTTCGTCAGGTCGTAGGGCTTGGTCGGCTTCGGTGCCTTGCCCTTCTTC 16532151 Query 46155 GCCA---TGAAGTACACGCCGCGCGT--GATC-TCGACGCCGTACAGCTGTTTCAACGCC 46208 ||| ||||||| ||||| | | || | ||||| ||||| | | ||| Sbjct 16532150 CCCACCATGAAGTAGTCGCCGGTCTTCGGAGCCTCGACACCGTAGGTCATCGCGACCGCG 16532091 Query 46209 AGCGCGTACACCGCGAGCTGAAAGTCATCTCCGGGCTTGAGTCCGGACTTCCAGTCGACC 46268 ||||||||||| ||||||| ||||| || || || | | |||| ||| |||| Sbjct 16532090 AGCGCGTACACGCCGAGCTGGAAGTCGTCACCCGGTTGGTTCCCGGTCTTGTAGTCCCGG 16532031 Query 46269 ACCATCACCTCACCGTCGAGCACGAGCACCGCGTCGATGTAGCCCCGGATCTCTATCCCA 46328 || | ||| ||||||| ||||| || ||||||||||| || || | | ||||| Sbjct 16532030 ACTCGAAGCTCCCCGTCGACCACGACGACGGCGTCGATGTATCCGCGAACCAGGATCCCG 16531971 Query 46329 TCGAGTTCGAACTCGATCGCGAGCTCTATCCCCGGGGTACCGTCCGGTGTGTGCCACACC 46388 ||||| |||| ||||| ||||| ||| | || ||||||||||| || ||| | | Sbjct 16531970 TCGAGCTCGATCTCGAAGTACAGCTCGATCGCTGGCGTACCGTCCGGGGTCACCCAGATC 16531911 Query 46389 TCTAGGCTCTGGTGGTTGTCGATCCAGTCCAGGGTCTTGTCCACCTGCTGCAGCCCGATA 46448 || ||| | || | | || ||| | | | ||| || ||||||| ||| |||| Sbjct 16531910 TCCTGGC-CCGGAG--TCTCCCGCCACGCGAAGAACTTCTCGACCTGCTCCAGGCCGACG 16531854 Query 46449 CCCCAGCGACGCTCGATGTCGTCAGCG-CCGCGGTACGGCCCGGAGGAGAACCACCAGCC 46507 | || ||||||||||| || | ||| |||||| || || | |||||| | Sbjct 16531853 GTGTACCGGCGCTCGATGTC-TCGCTGACCGTTGTACGGACCAGACCACGTCCACCACTC 16531795 Query 46508 GAGGTTAGGGGTCTCCTCGGT--AGCTTCGTTGATCCCATCGGCGTACTCGGCC--TTGA 46563 || ||| |||||||||||||| || || | | | |||||| | ||| || Sbjct 16531794 GAAGTTCGGGGTCTCCTCGGTGAAGGCTC--CAACGTCGTTGGCGTAGT--GCCAACGGA 16531739 Query 46564 AGATCTCATAGCACTCTTCGCGCGTCAGCGGTGAGCCGGCGAGCTTCGATAGCATGTATT 46623 | || || | | ||| || |||||||||| |||| | || | ||| | | Sbjct 16531738 ACATGTCCTTGGCCTCGTCAAGCGTCAGCGGCATGCCGTAGGACTCCCATACCTCGACCG 16531679 Query 46624 TCTCAGCCACCGCGTGGACCCCAGTACCCTGCTGCAGCCAGGCCGCTGGGCGTTTCCACA 46683 |||||| || ||||||| | |||| |||||| |||||||||||||||| || | ||||| Sbjct 16531678 CCTCAGCGACAGCGTGGAACGCAGTCCCCTGCGGCAGCCAGGCCGCTGGCCGCTGCCACA 16531619 Query 46684 C 46684 | Sbjct 16531618 C 16531618 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 170931606931904