Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_028940.1 Length=170286 Score E Sequences producing significant alignments: (Bits) Value seq82 203 4e-47 >seq82 Length=657493 Score = 203 bits (224), Expect = 4e-47 Identities = 635/969 (66%), Gaps = 46/969 (5%) Strand=Plus/Plus Query 144759 AGCTTCTTTTACAGGATAATCCTGATAGTCTAAAAGATTATCTAGTGCACGAACCATTAC 144818 |||| || || ||||||| ||||| ||||| | | ||| ||||||||||| || Sbjct 460340 AGCTGCTAATATTGGATAATTTTGATATTCTAATATTTCATCAAGTGCACGAACTGATAA 460399 Query 144819 TGAAGCTAATTCGTTAATTGTATCTTGGTCTTGATAATCAAACGAATCTAGAACATACGC 144878 | || |||||| |||| |||| || | ||| || || | ||| | | | || Sbjct 460400 TACAGATAATTCTTTAAA---ATCT--GT-TAGATTATTAATAGTTCCTAAATTAAAAGC 460453 Query 144879 AGCTAATGTACATAATGCAATTTCTGGGTCATCTGAACCAACATC---------TTTAGT 144929 || ||||||||| | |||||||||| | | | ||| || |||||| Sbjct 460454 AGATAATGTACAAAGTGCAATTTCTCCTTTTTTATCATCAATATTATTTAAAGATTTAGT 460513 Query 144930 AGGTAAAGCAATCTCACAACATAAGTTACTTTGTTTAATAGGCGCCACTTCTTGAATAAA 144989 ||||||| ||| || | ||||| ||| |||| | || || | | || || |||| Sbjct 460514 GGGTAAAGTAATTTCTAAGCATAAATTAGATTGTCTTATTGGAGATAATTTAGGATTAAA 460573 Query 144990 TGGACCATATTTGTTTGTGTTATCTACAAAGAAAGGATAAATTCGTGCGGTGCCAGAACG 145049 || || || | || | ||||||| |||||| ||| | || ||| | Sbjct 460574 TGCACTATGTGAATTACAATGATCTACATTTTGTATATAAATACGTCCTGT---AGAT-G 460629 Query 145050 TTCAGTGAAAAATGATTCA----AACAAATCTAAAGCTTTGATTCGTTTTTTACGAATTA 145105 ||| | |||||| | || |||||||| ||||| || | |||||| || || Sbjct 460630 TTCTTTCTTGCATGATTAACGAAAATAAATCTAATGCTTTTATACTTTTTTTCCGTATAT 460689 Query 145106 CTGGAtttttttC-TAGTGATTCATAAATCTCTTTAAACTTTATTCTATCAGTAAAATAC 145164 | ||||||||| || ||| | ||| | |||| ||| ||| | || || |||| | Sbjct 460690 TTTTATTTTTTTCATATTGAAT-ATATTTTTCTTCAAATTTTTCTTGATTAGAAAAAAAA 460748 Query 145165 GAATTATATAATTCATTATTAT-AGACATCAGGACTAAAAAGAGTAATGTAATCGTTTTT 145223 | |||||||| | | | || |||| || ||||| ||||||||| ||||| Sbjct 460749 TATTTATATAAGTTAGGAACATCAGAC----GGGCTAAA-----TAATGTAATTTTTTTT 460799 Query 145224 AATCAGA-----CGTTCAATCATCAAATCATTGATTTGAATTCCATAATCAAGATGCCTG 145278 | | | | || | |||||| | ||| ||||| | | ||||||||| || | Sbjct 460800 CCTGATAATAATCTTTGATACATCAATTTATTAATTTGTACTGCATAATCAACGTGACGT 460859 Query 145279 ATTCGATTTTCTTCTACGCCTTTGTTGTTTTTAAGGACTAAAAGATTTTCTGCTTCAAGG 145338 | || ||||||||| | ||| | || ||||| | ||||| | | |||| ||||| Sbjct 460860 ACTCTATTTTCTTCAATGCCCCTATTATTTTTTAAAACTAATAAACTTTCAATTTCAAAA 460919 Query 145339 TGCCACATTGGGTAATATAATGTTGCCGCACCACCACGAATTCCACCTTGAGAACAACTT 145398 ||||| ||||| ||| ||| |||||||| ||||| | || ||| ||||||||||| | Sbjct 460920 TGCCATATTGGATAAAATATAGTTGCCGCTCCACCTCTAACTCCTCCTTGAGAACAGGAT 460979 Query 145399 TTAACAGAAGCCAAGTGAGT-TTTCCAGAATGGAATAACACCCGTATGCCGCACTTCACC 145457 || |||| | | | | | ||| | || |||||| ||| ||||| |||| || Sbjct 460980 TTTACAGCA-CTTTGAAAATGTTTATAAAAAGGAATACAACCAGTATGAAATGCTTCGCC 461038 Query 145458 GTGACCAATCTTAGAACCTTCAGCGCGATACATTCCGGCGTTAACACCAATACCAGCGCG 145517 | | ||| | |||| | || ||| |||| || |||| |||||| || || || Sbjct 461039 ATTTCTAATAGGACTACCTACTGCACGAATTTTTCCAGCATTAATACCAATTCCTGCTCG 461098 Query 145518 TTTACTGATATATTTGATAAT-GCTTTCGTTCACT-TTGTTAATTGAATTTAGCGAATCG 145575 || | | |||||| | ||| | | || | | |||||| |||| ||| ||| Sbjct 461099 TTGAGAAACATATTTTACAATAGAACTAGT--AGTAGCGTTAATAGAATCTAGATTATCA 461156 Query 145576 CCACCTTCAATTACTACACATGAACTGAATTGACGAGTTGGTGTACGTACACCTGCCATA 145635 ||| |||||||| |||||||| || ||||| ||||| || || | || || | |||| Sbjct 461157 TCACATTCAATTAAAACACATGAGCTAAATTGTCGAGTAGGAGTTCTAACTCCAGACATA 461216 Query 145636 ATAGGAGTAGGCAAAGAAATTTGACGTTTTGATACAGCATTATAAAAACGAATAATGTGT 145695 || || || || |||||||||| |||| | |||||||||||||| || || Sbjct 461217 ATTGGTGTCGGTAAAGAAATTTTGAAAGTTGAAATGGCATTATAAAAACGCTGAACGTAA 461276 Query 145696 TTCAATCTA 145704 |||| |||| Sbjct 461277 TTCATTCTA 461285 Score = 89.7 bits (98), Expect = 6e-13 Identities = 66/76 (87%), Gaps = 1/76 (1%) Strand=Plus/Minus Query 75478 TGACCCTTGCCGGATTCGAACCAGCGACCGAGCAATTATGAGTTGCCTGCTC-TACCTCT 75536 || ||| ||| ||||| |||||||||||| ||| ||||||||| |||||||| |||| || Sbjct 216844 TGGCCCCTGCTGGATTTGAACCAGCGACCAAGCGATTATGAGTCGCCTGCTCTTACCACT 216785 Query 75537 GAGCTAAAGGGCCTTA 75552 ||||||||||||| || Sbjct 216784 GAGCTAAAGGGCCGTA 216769 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 544777829660160