Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_028941.1 Length=51161 Score E Sequences producing significant alignments: (Bits) Value seq18 120 1e-22 seq9 120 1e-22 seq8 87.8 6e-13 >seq18 Length=36757632 Score = 120 bits (132), Expect = 1e-22 Identities = 388/600 (65%), Gaps = 26/600 (4%) Strand=Plus/Plus Query 44120 TCCCGCGTCCAGTCCGTCAGGTCGTACGGATACGTCGGCTT---------GCCGGTCTTC 44170 || |||||||| | |||||||||||| || | |||||||| ||| ||||| Sbjct 22718134 TCACGCGTCCACTTCGTCAGGTCGTAGGGCTTGGTCGGCTTCGGTGCCTTGCCCTTCTTC 22718193 Query 44171 GCCA---TGAAGTACACACCGCGCGT--GATC-TCGACGCCGTACAGCTGTTTCAACGCC 44224 ||| ||||||| | ||| | | || | ||||| ||||| | | ||| Sbjct 22718194 CCCACCATGAAGTAGTCGCCGGTCTTCGGAGCCTCGACACCGTAGGTCATCGCGACCGCG 22718253 Query 44225 AGCGCGTACACCGCGAGCTGAAAGTCATCCCCGGGCTTGAGCCCGGTCTTCCAGTCGACC 44284 ||||||||||| ||||||| ||||| || || || | | ||||||||| |||| Sbjct 22718254 AGCGCGTACACGCCGAGCTGGAAGTCGTCACCCGGTTGGTTCCCGGTCTTGTAGTCCCGG 22718313 Query 44285 ACCAGCACCTCACCNNNNNNNNNNNNNNNNGCGTCGATGTAGCCCCGGATCTCTATCCCA 44344 || | | ||| || ||||||||||| || || | | ||||| Sbjct 22718314 ACTCGAAGCTCCCCGTCGACCACGACGACGGCGTCGATGTATCCGCGAACCAGGATCCCG 22718373 Query 44345 TCGAGCTCGAACTCGATCGCGAGCTCTATCCCCGGGGTACCGTCCGGTGTGTGCCACACC 44404 |||||||||| ||||| ||||| ||| | || ||||||||||| || ||| | | Sbjct 22718374 TCGAGCTCGATCTCGAAGTACAGCTCGATCGCTGGCGTACCGTCCGGGGTCACCCAGATC 22718433 Query 44405 TCTAGGCTCTGGTGGCTGTCGATCCAGTCCAGGGTCTTGTCCACCTGCTGCAGCCCGATA 44464 || ||| | || | || || ||| | | | ||| || ||||||| ||| |||| Sbjct 22718434 TCCTGGC-CCGGAGTCTCCCG--CCACGCGAAGAACTTCTCGACCTGCTCCAGGCCGACG 22718490 Query 44465 CCCCAGCGACGCTCGATGTCGTCCGCGCCGCGGCACGGCCCGGAAGCGAACCACCAGCCG 44524 | || ||||||||||| | ||| | |||| || || |||||| || Sbjct 22718491 GTGTACCGGCGCTCGATGTCTCGCTGACCGTTGTACGGACCAGACCACGTCCACCACTCG 22718550 Query 44525 AGGTTCGGGGTCTCCTCGGT--AGCTTCGTTGATCCCGTCGGCGTACTCGGCC--TTGAA 44580 | |||||||||||||||||| || || | ||| |||||| | ||| ||| Sbjct 22718551 AAGTTCGGGGTCTCCTCGGTGAAGGCTC--CAACGTCGTTGGCGTAGT--GCCAACGGAA 22718606 Query 44581 GATCTCATAGCACTCTTCGCGCGTCAGCGGTGAGCCGGCGAGTTTCGAGAGCATGTATTT 44640 || || | | ||| || |||||||||| |||| | | | | | | | Sbjct 22718607 CATGTCCTTGGCCTCGTCAAGCGTCAGCGGCATGCCGTAGGACTCCCATACCTCGACCGC 22718666 Query 44641 CTCAGCCACCGCGTGGACCCCGGTACCCTGCTGCAGCCACGCCGCTGGGCGTCTCCACAC 44700 |||||| || ||||||| | | || |||||| ||||||| |||||||| || |||||| Sbjct 22718667 CTCAGCGACAGCGTGGAACGCAGTCCCCTGCGGCAGCCAGGCCGCTGGCCGCTGCCACAC 22718726 >seq9 Length=46179939 Score = 120 bits (132), Expect = 1e-22 Identities = 388/600 (65%), Gaps = 26/600 (4%) Strand=Plus/Minus Query 44120 TCCCGCGTCCAGTCCGTCAGGTCGTACGGATACGTCGGCTT---------GCCGGTCTTC 44170 || |||||||| | |||||||||||| || | |||||||| ||| ||||| Sbjct 16532210 TCACGCGTCCACTTCGTCAGGTCGTAGGGCTTGGTCGGCTTCGGTGCCTTGCCCTTCTTC 16532151 Query 44171 GCCA---TGAAGTACACACCGCGCGT--GATC-TCGACGCCGTACAGCTGTTTCAACGCC 44224 ||| ||||||| | ||| | | || | ||||| ||||| | | ||| Sbjct 16532150 CCCACCATGAAGTAGTCGCCGGTCTTCGGAGCCTCGACACCGTAGGTCATCGCGACCGCG 16532091 Query 44225 AGCGCGTACACCGCGAGCTGAAAGTCATCCCCGGGCTTGAGCCCGGTCTTCCAGTCGACC 44284 ||||||||||| ||||||| ||||| || || || | | ||||||||| |||| Sbjct 16532090 AGCGCGTACACGCCGAGCTGGAAGTCGTCACCCGGTTGGTTCCCGGTCTTGTAGTCCCGG 16532031 Query 44285 ACCAGCACCTCACCNNNNNNNNNNNNNNNNGCGTCGATGTAGCCCCGGATCTCTATCCCA 44344 || | | ||| || ||||||||||| || || | | ||||| Sbjct 16532030 ACTCGAAGCTCCCCGTCGACCACGACGACGGCGTCGATGTATCCGCGAACCAGGATCCCG 16531971 Query 44345 TCGAGCTCGAACTCGATCGCGAGCTCTATCCCCGGGGTACCGTCCGGTGTGTGCCACACC 44404 |||||||||| ||||| ||||| ||| | || ||||||||||| || ||| | | Sbjct 16531970 TCGAGCTCGATCTCGAAGTACAGCTCGATCGCTGGCGTACCGTCCGGGGTCACCCAGATC 16531911 Query 44405 TCTAGGCTCTGGTGGCTGTCGATCCAGTCCAGGGTCTTGTCCACCTGCTGCAGCCCGATA 44464 || ||| | || | || || ||| | | | ||| || ||||||| ||| |||| Sbjct 16531910 TCCTGGC-CCGGAGTCTCCCG--CCACGCGAAGAACTTCTCGACCTGCTCCAGGCCGACG 16531854 Query 44465 CCCCAGCGACGCTCGATGTCGTCCGCGCCGCGGCACGGCCCGGAAGCGAACCACCAGCCG 44524 | || ||||||||||| | ||| | |||| || || |||||| || Sbjct 16531853 GTGTACCGGCGCTCGATGTCTCGCTGACCGTTGTACGGACCAGACCACGTCCACCACTCG 16531794 Query 44525 AGGTTCGGGGTCTCCTCGGT--AGCTTCGTTGATCCCGTCGGCGTACTCGGCC--TTGAA 44580 | |||||||||||||||||| || || | ||| |||||| | ||| ||| Sbjct 16531793 AAGTTCGGGGTCTCCTCGGTGAAGGCTC--CAACGTCGTTGGCGTAGT--GCCAACGGAA 16531738 Query 44581 GATCTCATAGCACTCTTCGCGCGTCAGCGGTGAGCCGGCGAGTTTCGAGAGCATGTATTT 44640 || || | | ||| || |||||||||| |||| | | | | | | | Sbjct 16531737 CATGTCCTTGGCCTCGTCAAGCGTCAGCGGCATGCCGTAGGACTCCCATACCTCGACCGC 16531678 Query 44641 CTCAGCCACCGCGTGGACCCCGGTACCCTGCTGCAGCCACGCCGCTGGGCGTCTCCACAC 44700 |||||| || ||||||| | | || |||||| ||||||| |||||||| || |||||| Sbjct 16531677 CTCAGCGACAGCGTGGAACGCAGTCCCCTGCGGCAGCCAGGCCGCTGGCCGCTGCCACAC 16531618 >seq8 Length=24646021 Score = 87.8 bits (96), Expect = 6e-13 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 10064 TTCTACGACTCGCAGCGGGCGCAGCACCACCCGGATCTCCCTCGTAACGATCGGCCCCTG 10123 ||||||||||| ||||| | ||||||||||| || || || ||||| || | | Sbjct 19508608 TTCTACGACTCCCAGCGCAGACTCCACCACCCGGAGCTTCCCCGCAACGAGAGGTTGC-G 19508550 Query 10124 GAGGGGACGAC-GTTCGAGAAGTTCGTCGAGAACATGGACCCGGCTCGTGAGCGGATGCA 10182 ||| | | | || ||| ||||||| ||||||||| || || || || || || Sbjct 19508549 GAGCGACCTCCAGTGGGAGTGGTTCGTCAGGAACATGGAGCCCGCACGAAAGGGGTTGTC 19508490 Query 10183 GCAGGCGGACACCCGCGGGGACGCGCTGACGCACCTGACGCTGCGCG-CCGTCCGCGAGG 10241 |||||| ||| | | | ||| | || | ||||| || ||| | || ||||| | Sbjct 19508489 GCAGGCCGACTCTCCTCAAGCTGCGGTCACCAAGCTGAC-CTTGGCGACAGTGCGCGAAG 19508431 Query 10242 TGGAGAACGCAGGCCGCCAGCAGATCATCCACGCCGTCGAGAACGACCC 10290 |||||| ||||| |||| ||||||||| ||| ||| |||||||||| Sbjct 19508430 TGGAGATGGCAGGTCGCCGACAGATCATCGGCGCTGTCAAGAACGACCC 19508382 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 163590926880576