Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_028957.1 Length=171541 Score E Sequences producing significant alignments: (Bits) Value seq82 129 6e-25 >seq82 Length=657493 Score = 129 bits (142), Expect = 6e-25 Identities = 305/461 (66%), Gaps = 0/461 (0%) Strand=Plus/Plus Query 142832 CATCAAGTTATTCAACTGGACGCCATAGTCCATATGTCTGATGCGGTTTTCTTCAACGCC 142891 |||||| ||||| | || || |||| || | || | | | |||||||||| ||| Sbjct 460820 CATCAATTTATTAATTTGTACTGCATAATCAACGTGACGTACTCTATTTTCTTCAATGCC 460879 Query 142892 CTTGTTGTTCTTCAGAACGAGCAAATTTTCAACTTCCAAATGCCATAAAGGATAATAAGC 142951 | | || || || | ||| | ||| |||||| ||| |||||||||| |||||| | Sbjct 460880 CCTATTATTTTTTAAAACTAATAAACTTTCAATTTCAAAATGCCATATTGGATAAAATAT 460939 Query 142952 AGTAGCAGCGCCGCCCCGGATTCCACCTTGTGAACAGGATTTAACAGCCGTTTGGAAATG 143011 ||| || || || || | | ||| ||||| ||||||||||| ||||| |||| ||||| Sbjct 460940 AGTTGCCGCTCCACCTCTAACTCCTCCTTGAGAACAGGATTTTACAGCACTTTGAAAATG 460999 Query 143012 TTTCCAGAACGGAATAACACCAGTATGACGAACTTCACCCATACCGATTTTCGAACCTTC 143071 ||| | || |||||| |||||||||| |||| || | | || |||| | Sbjct 461000 TTTATAAAAAGGAATACAACCAGTATGAAATGCTTCGCCATTTCTAATAGGACTACCTAC 461059 Query 143072 AGCACGAATCATACCAACGTTGATGCCGATACCCGCACGCTTACTGATATATTCGATGAT 143131 |||||||| | ||| | || || || || || || || | | | ||||| | || Sbjct 461060 TGCACGAATTTTTCCAGCATTAATACCAATTCCTGCTCGTTGAGAAACATATTTTACAAT 461119 Query 143132 TGAATTGGCAGTCTTATTGATTGACTTCAGGGAGTCTGCAGCTTCGATAACCACGCAGGA 143191 ||| | | ||| || || || | || || || ||| || | || || || Sbjct 461120 AGAACTAGTAGTAGCGTTAATAGAATCTAGATTATCATCACATTCAATTAAAACACATGA 461179 Query 143192 ACTGAACTGCCGGGTAGGTGTTCTGGCGCCCGCCATGATAGGTGTGGGCAACGAAACCTG 143251 || || || || ||||| ||||| | || | ||| || ||||| || || |||| | Sbjct 461180 GCTAAATTGTCGAGTAGGAGTTCTAACTCCAGACATAATTGGTGTCGGTAAAGAAATTTT 461239 Query 143252 TCTTGTGGATACTGCATCATAAAAACGGCAAACGTGCTTCa 143292 || || | |||| ||||||||| ||||| |||| Sbjct 461240 GAAAGTTGAAATGGCATTATAAAAACGCTGAACGTAATTCA 461280 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548793760584960