Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_028976.1 Length=50113 Score E Sequences producing significant alignments: (Bits) Value seq18 129 2e-25 >seq18 Length=36757632 Score = 129 bits (142), Expect = 2e-25 Identities = 377/578 (65%), Gaps = 22/578 (4%) Strand=Plus/Minus Query 33060 CGCAATGGTGAGCCGGGGTACTGGAACTCCAGCTACTCCAACGAGGGCGAGGTCGGCACG 33119 ||||| || ||||||||| ||| || |||| ||||||| || ||| | | | Sbjct 22717625 CGCAACGGCGAGCCGGGGATGTGGGACAGCAGCCTGTCCAACGTCGGTGAGCCCAACGAG 22717566 Query 33120 GTCATCGCGACCAACCCGTGCGGTGAGATCGCACTGGAGCCGACCGAGAACTGCAACCTC 33179 ||| || |||||||||||||| |||||| | ||||||||| ||| ||||||||| Sbjct 22717565 GTCGTCTGCACCAACCCGTGCGGGGAGATCACGCTGGAGCCGTGGGAGCCCTGCAACCTA 22717506 Query 33180 GGGCACATCAACCTGGACCACTTCGCC-CCGAG--CGTGAAGGGTGGTGGCTTCCAGAAG 33236 |||||||||||||| | |||| | |||| || |||| | | || | Sbjct 22717505 GGGCACATCAACCTCGCGGCGTTCGTCACCGACGCCGGGAAGACCGACTACATCGAC--- 22717449 Query 33237 GGCAAGCTGCTCCGAGCCCACCAGCTCATGACCCGCTTCCTCATGCGCGCCACGTACGGC 33296 ||| |||||||||||| || ||||| || ||||| || || || |||| | Sbjct 22717448 ------CTGATCCGAGCCCACCGTCTGATGACGCGGTTCCTGATCCGGGCGACGTTCTCA 22717395 Query 33297 GACGTGACGGACGCGGAGCAGGCGGCCAAGCTCGCGA--GCAACCGGCGCATCGGCGTAG 33354 | || | || || || || | | | || || |||||||||||||||| || | Sbjct 22717394 GCGGTCGCTGATCCGAAGA--GCCGAGAGGTTCTGGATCGCAACCGGCGCATCGGTGTTG 22717337 Query 33355 GCCACCTCGGGGTGCAGGGCTTNNNNNNNNNNNNNNNNNNNNGCTACTCGTCGGC-CCCG 33413 | |||||||| ||| || | || ||| ||| |||| Sbjct 22717336 GGCACCTCGGAGTGGCCTCCTATTTGGCCCTGACAGGCCGTAGGTATTCGCAGGCACCCG 22717277 Query 33414 TACAGC-GAGGTCTTCCGCTGGCTGCTGGAGGATCTGTACGACGCGGTCCGCGAGGAGGC 33472 | | | ||| ||||| || || ||| || || | |||| | | ||| Sbjct 22717276 GAGACAAGCGGTTCACCGCTTTCT--TGCGGGAGATGGCCGCTGAGGTCGACAGAGCGGC 22717219 Query 33473 TCGGGAGTAC-GCCTTCCAGCTCCGCATCCCGGAGCCGGTGAAGGTGACGACCGTGGCCC 33531 ||||| | ||| | || | || ||||||| |||||| ||| | || ||||||| Sbjct 22717218 CGAGGAGTTCAGCCATG-AGTTGCGGATCCCGGTGCCGGTCAAGAAGCGCACGGTGGCCC 22717160 Query 33532 CGACTGGCTCGATCGCGAAGCTGCCTGGCGTGAGCGAGGGCATCCACCCGATCTACGCCC 33591 |||| || | ||||||||| ||||||| || || ||||| ||||||||||||| | ||| Sbjct 22717159 CGACAGGGACCATCGCGAAGATGCCTGGAGTCAGTGAGGGTATCCACCCGATCTTCTCCC 22717100 Query 33592 GGCACTTCCTGCGTCGCGTGCGCTTCTCCATGCCGGAC 33629 || ||||| | || ||| | || ||||| ||| |||| Sbjct 22717099 GGTACTTCATCCGGCGCATCCGGTTCTCGGTGCTGGAC 22717062 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160237381678400