Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_029006.1 Length=35703 Score E Sequences producing significant alignments: (Bits) Value seq137 170 4e-38 >seq137 Length=409738 Score = 170 bits (188), Expect = 4e-38 Identities = 404/588 (69%), Gaps = 32/588 (5%) Strand=Plus/Minus Query 5003 AGACAAGCTCAAGAAGTTCAAGCAGCTATGATAGTAGCTAAGAAATTTCCAAGGGATGAA 5062 |||||||| |||||||| ||| |||||| ||||| || || || ||||| || | Sbjct 29046 AGACAAGCGCAAGAAGTACAAATGGCTATGTATGTAGCGAAAAACTTCCCAAGAGAC-AC 28988 Query 5063 ATAGAA-GCTTTTAATAAGATATTAAGAGCTTGCCAAAGAAAA--AGTTTAGCAGAGCAA 5119 ||| | || ||| | ||||| | | || ||| |||||||| |||| || || || Sbjct 28987 ATACACTGCATTTGAAAAGATTATGAAAGAATGCGAAAGAAAATTAGTT--GCTGAA-AA 28931 Query 5120 AGCA-TGTATGAATATCCAAGGGGTGGAATGAAAGTAACTGGACCAAGTATAAGACTAGC 5178 ||| | ||| |||||||||| ||||| ||||| || ||| ||| | |||| Sbjct 28930 TGCAGTATATCAATATCCAAGAGGTGGGCAAAAAGTGCAAGGGCCATCTATCCGGTTAGC 28871 Query 5179 AGAAGCATTAGCACAAAATTGGGGTAACTTAGATTATGGAATTATAGAATTAGAACAAAA 5238 || | | | || | || ||||| || | ||||| |||||||| || ||||| ||||| Sbjct 28870 TGAGGTAATCGCTCGGAACTGGGGGAATGTTGATTACGGAATTATTGAGTTAGATCAAAA 28811 Query 5239 GAATGGAGA--AAGCCAGGTTATGGCATATGCTTGGGATTTAGAAACAAATACTAGACAA 5296 ||||||||| | ||| | ||||| ||||| ||||| | ||||||||||| |||||| Sbjct 28810 GAATGGAGAGTCATCCA--TGATGGCTTATGCATGGGACCTTGAAACAAATACAAGACAA 28753 Query 5297 ACAAAAATATTTAATGTTCCACATATTAGGTCCA-CAAA---AAAGGGAAATAAAGTTTT 5352 |||||||| || | |||| |||| | || || |||| |||| |||||| | Sbjct 28752 ACAAAAATTTTCACTGTTAAACAT-GAACGTACAGCAAAAGGAAAGACAAATAA---GCT 28697 Query 5353 GACAGATCCTAGAGATATATATGAAATGGTAGCTAATCAAGGAG-CTAGAAGATTAAGAG 5411 || ||| ||||| | |||||| | ||| || || || | | ||||| | ||| Sbjct 28696 AACTGATAGCCGAGATGTTTATGAATTAACAGCCAA-CATGGGGACACGAAGAATGCGAG 28638 Query 5412 CTTGCATTTTAGGAGTAATACCAGGTGATGTAATAGATAGTGCTATAGAACAATGTGAAT 5471 ||||||| |||||| | ||||| || || | | ||| ||| || || ||||| ||| Sbjct 28637 CTTGCATCTTAGGAATTATACCTGGCGACATTGTTGATGCAGCTGTACAAAAATGT-AAT 28579 Query 5472 TA-ACATTGAAAACTAAT---AATCCAGAACCATTAATAGATAGAGTTAGAAAGATGGTT 5527 | ||||| || |||| | |||||| ||| ||| | | | || | || Sbjct 28578 GACACATT---AATTAATGGCCAGAAAGAACCGTTAGAAGACCGTCTACGCAA-AGCATT 28523 Query 5528 A-AGGCTTTTGAAGATAAGTTTAGTGTAACAAAGGAAATGATAGAAGA 5574 | | || ||| || | | ||| ||||||| ||||||||||| ||||| Sbjct 28522 AGACGCATTTAAAAAAGACTTTGGTGTAACTAAGGAAATGATTGAAGA 28475 Score = 170 bits (188), Expect = 4e-38 Identities = 404/588 (69%), Gaps = 32/588 (5%) Strand=Plus/Minus Query 5003 AGACAAGCTCAAGAAGTTCAAGCAGCTATGATAGTAGCTAAGAAATTTCCAAGGGATGAA 5062 |||||||| |||||||| ||| |||||| ||||| || || || ||||| || | Sbjct 71844 AGACAAGCGCAAGAAGTACAAATGGCTATGTATGTAGCGAAAAACTTCCCAAGAGAC-AC 71786 Query 5063 ATAGAA-GCTTTTAATAAGATATTAAGAGCTTGCCAAAGAAAA--AGTTTAGCAGAGCAA 5119 ||| | || ||| | ||||| | | || ||| |||||||| |||| || || || Sbjct 71785 ATACACTGCATTTGAAAAGATTATGAAAGAATGCGAAAGAAAATTAGTT--GCTGAA-AA 71729 Query 5120 AGCA-TGTATGAATATCCAAGGGGTGGAATGAAAGTAACTGGACCAAGTATAAGACTAGC 5178 ||| | ||| |||||||||| ||||| ||||| || ||| ||| | |||| Sbjct 71728 TGCAGTATATCAATATCCAAGAGGTGGGCAAAAAGTGCAAGGGCCATCTATCCGGTTAGC 71669 Query 5179 AGAAGCATTAGCACAAAATTGGGGTAACTTAGATTATGGAATTATAGAATTAGAACAAAA 5238 || | | | || | || ||||| || | ||||| |||||||| || ||||| ||||| Sbjct 71668 TGAGGTAATCGCTCGGAACTGGGGGAATGTTGATTACGGAATTATTGAGTTAGATCAAAA 71609 Query 5239 GAATGGAGA--AAGCCAGGTTATGGCATATGCTTGGGATTTAGAAACAAATACTAGACAA 5296 ||||||||| | ||| | ||||| ||||| ||||| | ||||||||||| |||||| Sbjct 71608 GAATGGAGAGTCATCCA--TGATGGCTTATGCATGGGACCTTGAAACAAATACAAGACAA 71551 Query 5297 ACAAAAATATTTAATGTTCCACATATTAGGTCCA-CAAA---AAAGGGAAATAAAGTTTT 5352 |||||||| || | |||| |||| | || || |||| |||| |||||| | Sbjct 71550 ACAAAAATTTTCACTGTTAAACAT-GAACGTACAGCAAAAGGAAAGACAAATAA---GCT 71495 Query 5353 GACAGATCCTAGAGATATATATGAAATGGTAGCTAATCAAGGAG-CTAGAAGATTAAGAG 5411 || ||| ||||| | |||||| | ||| || || || | | ||||| | ||| Sbjct 71494 AACTGATAGCCGAGATGTTTATGAATTAACAGCCAA-CATGGGGACACGAAGAATGCGAG 71436 Query 5412 CTTGCATTTTAGGAGTAATACCAGGTGATGTAATAGATAGTGCTATAGAACAATGTGAAT 5471 ||||||| |||||| | ||||| || || | | ||| ||| || || ||||| ||| Sbjct 71435 CTTGCATCTTAGGAATTATACCTGGCGACATTGTTGATGCAGCTGTACAAAAATGT-AAT 71377 Query 5472 TA-ACATTGAAAACTAAT---AATCCAGAACCATTAATAGATAGAGTTAGAAAGATGGTT 5527 | ||||| || |||| | |||||| ||| ||| | | | || | || Sbjct 71376 GACACATT---AATTAATGGCCAGAAAGAACCGTTAGAAGACCGTCTACGCAA-AGCATT 71321 Query 5528 A-AGGCTTTTGAAGATAAGTTTAGTGTAACAAAGGAAATGATAGAAGA 5574 | | || ||| || | | ||| ||||||| ||||||||||| ||||| Sbjct 71320 AGACGCATTTAAAAAAGACTTTGGTGTAACTAAGGAAATGATTGAAGA 71273 Score = 170 bits (188), Expect = 4e-38 Identities = 404/588 (69%), Gaps = 32/588 (5%) Strand=Plus/Minus Query 5003 AGACAAGCTCAAGAAGTTCAAGCAGCTATGATAGTAGCTAAGAAATTTCCAAGGGATGAA 5062 |||||||| |||||||| ||| |||||| ||||| || || || ||||| || | Sbjct 114565 AGACAAGCGCAAGAAGTACAAATGGCTATGTATGTAGCGAAAAACTTCCCAAGAGAC-AC 114507 Query 5063 ATAGAA-GCTTTTAATAAGATATTAAGAGCTTGCCAAAGAAAA--AGTTTAGCAGAGCAA 5119 ||| | || ||| | ||||| | | || ||| |||||||| |||| || || || Sbjct 114506 ATACACTGCATTTGAAAAGATTATGAAAGAATGCGAAAGAAAATTAGTT--GCTGAA-AA 114450 Query 5120 AGCA-TGTATGAATATCCAAGGGGTGGAATGAAAGTAACTGGACCAAGTATAAGACTAGC 5178 ||| | ||| |||||||||| ||||| ||||| || ||| ||| | |||| Sbjct 114449 TGCAGTATATCAATATCCAAGAGGTGGGCAAAAAGTGCAAGGGCCATCTATCCGGTTAGC 114390 Query 5179 AGAAGCATTAGCACAAAATTGGGGTAACTTAGATTATGGAATTATAGAATTAGAACAAAA 5238 || | | | || | || ||||| || | ||||| |||||||| || ||||| ||||| Sbjct 114389 TGAGGTAATCGCTCGGAACTGGGGGAATGTTGATTACGGAATTATTGAGTTAGATCAAAA 114330 Query 5239 GAATGGAGA--AAGCCAGGTTATGGCATATGCTTGGGATTTAGAAACAAATACTAGACAA 5296 ||||||||| | ||| | ||||| ||||| ||||| | ||||||||||| |||||| Sbjct 114329 GAATGGAGAGTCATCCA--TGATGGCTTATGCATGGGACCTTGAAACAAATACAAGACAA 114272 Query 5297 ACAAAAATATTTAATGTTCCACATATTAGGTCCA-CAAA---AAAGGGAAATAAAGTTTT 5352 |||||||| || | |||| |||| | || || |||| |||| |||||| | Sbjct 114271 ACAAAAATTTTCACTGTTAAACAT-GAACGTACAGCAAAAGGAAAGACAAATAA---GCT 114216 Query 5353 GACAGATCCTAGAGATATATATGAAATGGTAGCTAATCAAGGAG-CTAGAAGATTAAGAG 5411 || ||| ||||| | |||||| | ||| || || || | | ||||| | ||| Sbjct 114215 AACTGATAGCCGAGATGTTTATGAATTAACAGCCAA-CATGGGGACACGAAGAATGCGAG 114157 Query 5412 CTTGCATTTTAGGAGTAATACCAGGTGATGTAATAGATAGTGCTATAGAACAATGTGAAT 5471 ||||||| |||||| | ||||| || || | | ||| ||| || || ||||| ||| Sbjct 114156 CTTGCATCTTAGGAATTATACCTGGCGACATTGTTGATGCAGCTGTACAAAAATGT-AAT 114098 Query 5472 TA-ACATTGAAAACTAAT---AATCCAGAACCATTAATAGATAGAGTTAGAAAGATGGTT 5527 | ||||| || |||| | |||||| ||| ||| | | | || | || Sbjct 114097 GACACATT---AATTAATGGCCAGAAAGAACCGTTAGAAGACCGTCTACGCAA-AGCATT 114042 Query 5528 A-AGGCTTTTGAAGATAAGTTTAGTGTAACAAAGGAAATGATAGAAGA 5574 | | || ||| || | | ||| ||||||| ||||||||||| ||||| Sbjct 114041 AGACGCATTTAAAAAAGACTTTGGTGTAACTAAGGAAATGATTGAAGA 113994 Score = 170 bits (188), Expect = 4e-38 Identities = 404/588 (69%), Gaps = 32/588 (5%) Strand=Plus/Minus Query 5003 AGACAAGCTCAAGAAGTTCAAGCAGCTATGATAGTAGCTAAGAAATTTCCAAGGGATGAA 5062 |||||||| |||||||| ||| |||||| ||||| || || || ||||| || | Sbjct 157654 AGACAAGCGCAAGAAGTACAAATGGCTATGTATGTAGCGAAAAACTTCCCAAGAGAC-AC 157596 Query 5063 ATAGAA-GCTTTTAATAAGATATTAAGAGCTTGCCAAAGAAAA--AGTTTAGCAGAGCAA 5119 ||| | || ||| | ||||| | | || ||| |||||||| |||| || || || Sbjct 157595 ATACACTGCATTTGAAAAGATTATGAAAGAATGCGAAAGAAAATTAGTT--GCTGAA-AA 157539 Query 5120 AGCA-TGTATGAATATCCAAGGGGTGGAATGAAAGTAACTGGACCAAGTATAAGACTAGC 5178 ||| | ||| |||||||||| ||||| ||||| || ||| ||| | |||| Sbjct 157538 TGCAGTATATCAATATCCAAGAGGTGGGCAAAAAGTGCAAGGGCCATCTATCCGGTTAGC 157479 Query 5179 AGAAGCATTAGCACAAAATTGGGGTAACTTAGATTATGGAATTATAGAATTAGAACAAAA 5238 || | | | || | || ||||| || | ||||| |||||||| || ||||| ||||| Sbjct 157478 TGAGGTAATCGCTCGGAACTGGGGGAATGTTGATTACGGAATTATTGAGTTAGATCAAAA 157419 Query 5239 GAATGGAGA--AAGCCAGGTTATGGCATATGCTTGGGATTTAGAAACAAATACTAGACAA 5296 ||||||||| | ||| | ||||| ||||| ||||| | ||||||||||| |||||| Sbjct 157418 GAATGGAGAGTCATCCA--TGATGGCTTATGCATGGGACCTTGAAACAAATACAAGACAA 157361 Query 5297 ACAAAAATATTTAATGTTCCACATATTAGGTCCA-CAAA---AAAGGGAAATAAAGTTTT 5352 |||||||| || | |||| |||| | || || |||| |||| |||||| | Sbjct 157360 ACAAAAATTTTCACTGTTAAACAT-GAACGTACAGCAAAAGGAAAGACAAATAA---GCT 157305 Query 5353 GACAGATCCTAGAGATATATATGAAATGGTAGCTAATCAAGGAG-CTAGAAGATTAAGAG 5411 || ||| ||||| | |||||| | ||| || || || | | ||||| | ||| Sbjct 157304 AACTGATAGCCGAGATGTTTATGAATTAACAGCCAA-CATGGGGACACGAAGAATGCGAG 157246 Query 5412 CTTGCATTTTAGGAGTAATACCAGGTGATGTAATAGATAGTGCTATAGAACAATGTGAAT 5471 ||||||| |||||| | ||||| || || | | ||| ||| || || ||||| ||| Sbjct 157245 CTTGCATCTTAGGAATTATACCTGGCGACATTGTTGATGCAGCTGTACAAAAATGT-AAT 157187 Query 5472 TA-ACATTGAAAACTAAT---AATCCAGAACCATTAATAGATAGAGTTAGAAAGATGGTT 5527 | ||||| || |||| | |||||| ||| ||| | | | || | || Sbjct 157186 GACACATT---AATTAATGGCCAGAAAGAACCGTTAGAAGACCGTCTACGCAA-AGCATT 157131 Query 5528 A-AGGCTTTTGAAGATAAGTTTAGTGTAACAAAGGAAATGATAGAAGA 5574 | | || ||| || | | ||| ||||||| ||||||||||| ||||| Sbjct 157130 AGACGCATTTAAAAAAGACTTTGGTGTAACTAAGGAAATGATTGAAGA 157083 Score = 170 bits (188), Expect = 4e-38 Identities = 404/588 (69%), Gaps = 32/588 (5%) Strand=Plus/Minus Query 5003 AGACAAGCTCAAGAAGTTCAAGCAGCTATGATAGTAGCTAAGAAATTTCCAAGGGATGAA 5062 |||||||| |||||||| ||| |||||| ||||| || || || ||||| || | Sbjct 328538 AGACAAGCGCAAGAAGTACAAATGGCTATGTATGTAGCGAAAAACTTCCCAAGAGAC-AC 328480 Query 5063 ATAGAA-GCTTTTAATAAGATATTAAGAGCTTGCCAAAGAAAA--AGTTTAGCAGAGCAA 5119 ||| | || ||| | ||||| | | || ||| |||||||| |||| || || || Sbjct 328479 ATACACTGCATTTGAAAAGATTATGAAAGAATGCGAAAGAAAATTAGTT--GCTGAA-AA 328423 Query 5120 AGCA-TGTATGAATATCCAAGGGGTGGAATGAAAGTAACTGGACCAAGTATAAGACTAGC 5178 ||| | ||| |||||||||| ||||| ||||| || ||| ||| | |||| Sbjct 328422 TGCAGTATATCAATATCCAAGAGGTGGGCAAAAAGTGCAAGGGCCATCTATCCGGTTAGC 328363 Query 5179 AGAAGCATTAGCACAAAATTGGGGTAACTTAGATTATGGAATTATAGAATTAGAACAAAA 5238 || | | | || | || ||||| || | ||||| |||||||| || ||||| ||||| Sbjct 328362 TGAGGTAATCGCTCGGAACTGGGGGAATGTTGATTACGGAATTATTGAGTTAGATCAAAA 328303 Query 5239 GAATGGAGA--AAGCCAGGTTATGGCATATGCTTGGGATTTAGAAACAAATACTAGACAA 5296 ||||||||| | ||| | ||||| ||||| ||||| | ||||||||||| |||||| Sbjct 328302 GAATGGAGAGTCATCCA--TGATGGCTTATGCATGGGACCTTGAAACAAATACAAGACAA 328245 Query 5297 ACAAAAATATTTAATGTTCCACATATTAGGTCCA-CAAA---AAAGGGAAATAAAGTTTT 5352 |||||||| || | |||| |||| | || || |||| |||| |||||| | Sbjct 328244 ACAAAAATTTTCACTGTTAAACAT-GAACGTACAGCAAAAGGAAAGACAAATAA---GCT 328189 Query 5353 GACAGATCCTAGAGATATATATGAAATGGTAGCTAATCAAGGAG-CTAGAAGATTAAGAG 5411 || ||| ||||| | |||||| | ||| || || || | | ||||| | ||| Sbjct 328188 AACTGATAGCCGAGATGTTTATGAATTAACAGCCAA-CATGGGGACACGAAGAATGCGAG 328130 Query 5412 CTTGCATTTTAGGAGTAATACCAGGTGATGTAATAGATAGTGCTATAGAACAATGTGAAT 5471 ||||||| |||||| | ||||| || || | | ||| ||| || || ||||| ||| Sbjct 328129 CTTGCATCTTAGGAATTATACCTGGCGACATTGTTGATGCAGCTGTACAAAAATGT-AAT 328071 Query 5472 TA-ACATTGAAAACTAAT---AATCCAGAACCATTAATAGATAGAGTTAGAAAGATGGTT 5527 | ||||| || |||| | |||||| ||| ||| | | | || | || Sbjct 328070 GACACATT---AATTAATGGCCAGAAAGAACCGTTAGAAGACCGTCTACGCAA-AGCATT 328015 Query 5528 A-AGGCTTTTGAAGATAAGTTTAGTGTAACAAAGGAAATGATAGAAGA 5574 | | || ||| || | | ||| ||||||| ||||||||||| ||||| Sbjct 328014 AGACGCATTTAAAAAAGACTTTGGTGTAACTAAGGAAATGATTGAAGA 327967 Score = 170 bits (188), Expect = 4e-38 Identities = 404/588 (69%), Gaps = 32/588 (5%) Strand=Plus/Minus Query 5003 AGACAAGCTCAAGAAGTTCAAGCAGCTATGATAGTAGCTAAGAAATTTCCAAGGGATGAA 5062 |||||||| |||||||| ||| |||||| ||||| || || || ||||| || | Sbjct 372004 AGACAAGCGCAAGAAGTACAAATGGCTATGTATGTAGCGAAAAACTTCCCAAGAGAC-AC 371946 Query 5063 ATAGAA-GCTTTTAATAAGATATTAAGAGCTTGCCAAAGAAAA--AGTTTAGCAGAGCAA 5119 ||| | || ||| | ||||| | | || ||| |||||||| |||| || || || Sbjct 371945 ATACACTGCATTTGAAAAGATTATGAAAGAATGCGAAAGAAAATTAGTT--GCTGAA-AA 371889 Query 5120 AGCA-TGTATGAATATCCAAGGGGTGGAATGAAAGTAACTGGACCAAGTATAAGACTAGC 5178 ||| | ||| |||||||||| ||||| ||||| || ||| ||| | |||| Sbjct 371888 TGCAGTATATCAATATCCAAGAGGTGGGCAAAAAGTGCAAGGGCCATCTATCCGGTTAGC 371829 Query 5179 AGAAGCATTAGCACAAAATTGGGGTAACTTAGATTATGGAATTATAGAATTAGAACAAAA 5238 || | | | || | || ||||| || | ||||| |||||||| || ||||| ||||| Sbjct 371828 TGAGGTAATCGCTCGGAACTGGGGGAATGTTGATTACGGAATTATTGAGTTAGATCAAAA 371769 Query 5239 GAATGGAGA--AAGCCAGGTTATGGCATATGCTTGGGATTTAGAAACAAATACTAGACAA 5296 ||||||||| | ||| | ||||| ||||| ||||| | ||||||||||| |||||| Sbjct 371768 GAATGGAGAGTCATCCA--TGATGGCTTATGCATGGGACCTTGAAACAAATACAAGACAA 371711 Query 5297 ACAAAAATATTTAATGTTCCACATATTAGGTCCA-CAAA---AAAGGGAAATAAAGTTTT 5352 |||||||| || | |||| |||| | || || |||| |||| |||||| | Sbjct 371710 ACAAAAATTTTCACTGTTAAACAT-GAACGTACAGCAAAAGGAAAGACAAATAA---GCT 371655 Query 5353 GACAGATCCTAGAGATATATATGAAATGGTAGCTAATCAAGGAG-CTAGAAGATTAAGAG 5411 || ||| ||||| | |||||| | ||| || || || | | ||||| | ||| Sbjct 371654 AACTGATAGCCGAGATGTTTATGAATTAACAGCCAA-CATGGGGACACGAAGAATGCGAG 371596 Query 5412 CTTGCATTTTAGGAGTAATACCAGGTGATGTAATAGATAGTGCTATAGAACAATGTGAAT 5471 ||||||| |||||| | ||||| || || | | ||| ||| || || ||||| ||| Sbjct 371595 CTTGCATCTTAGGAATTATACCTGGCGACATTGTTGATGCAGCTGTACAAAAATGT-AAT 371537 Query 5472 TA-ACATTGAAAACTAAT---AATCCAGAACCATTAATAGATAGAGTTAGAAAGATGGTT 5527 | ||||| || |||| | |||||| ||| ||| | | | || | || Sbjct 371536 GACACATT---AATTAATGGCCAGAAAGAACCGTTAGAAGACCGTCTACGCAA-AGCATT 371481 Query 5528 A-AGGCTTTTGAAGATAAGTTTAGTGTAACAAAGGAAATGATAGAAGA 5574 | | || ||| || | | ||| ||||||| ||||||||||| ||||| Sbjct 371480 AGACGCATTTAAAAAAGACTTTGGTGTAACTAAGGAAATGATTGAAGA 371433 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 114126135148480