Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_029013.1 Length=177688 Score E Sequences producing significant alignments: (Bits) Value seq82 158 1e-33 >seq82 Length=657493 Score = 158 bits (174), Expect = 1e-33 Identities = 285/417 (68%), Gaps = 0/417 (0%) Strand=Plus/Plus Query 77171 ATACATCAAATCGTTAAGCTGAACGCCATAATCCAGGTGACGAATACGGTTATTCTCAAC 77230 ||||||||| | |||| || || ||||||| | |||||| | | || | |||| Sbjct 460817 ATACATCAATTTATTAATTTGTACTGCATAATCAACGTGACGTACTCTATTTTCTTCAAT 460876 Query 77231 ACCTTTGTTGTTTTTCAGAACCAGCAGGTTTTCAACTTCCAAATGCCAGATCGGATAATA 77290 || | || ||||| | ||| | | |||||| ||| |||||||| || |||||| | Sbjct 460877 GCCCCTATTATTTTTTAAAACTAATAAACTTTCAATTTCAAAATGCCATATTGGATAAAA 460936 Query 77291 CAACGTTGCAGCACCACCACGAACGCCACCTTGTGAACAGGATTTAACCGCTGTCTGAAT 77350 | ||||| || ||||| | ||| || ||||| ||||||||||| || || | |||| Sbjct 460937 TATAGTTGCCGCTCCACCTCTAACTCCTCCTTGAGAACAGGATTTTACAGCACTTTGAAA 460996 Query 77351 ATGTTTCCAGAACGGGATCACGCCTGTATGTACTGCTTCACCACCACGGATTTTAGAACC 77410 |||||| | || || || || ||||| | |||||| ||| | || | ||| Sbjct 460997 ATGTTTATAAAAAGGAATACAACCAGTATGAAATGCTTCGCCATTTCTAATAGGACTACC 461056 Query 77411 CATTGCGCGAATGTGTCCAGCATTAACACCGATACCCGCGCGTTGTGAAATATACTTCAC 77470 | ||| ||||| | ||||||||||| ||| || || || ||||| |||| ||| || || Sbjct 461057 TACTGCACGAATTTTTCCAGCATTAATACCAATTCCTGCTCGTTGAGAAACATATTTTAC 461116 Query 77471 GATCGCAGAGGTTACAGCATTCAGAGAACCCAGTGAATCACCTGATTCAATCACTACGCA 77530 || | | || ||| || | |||| | || |||| | ||||||| | || || Sbjct 461117 AATAGAACTAGTAGTAGCGTTAATAGAATCTAGATTATCATCACATTCAATTAAAACACA 461176 Query 77531 ACTGGAAAACTGACGCGTAGGAGTACGCACACCCGCCATAATAGGCGTAGGTAACGA 77587 | ||| || || |||||||| | || || | |||||| || || ||||| || Sbjct 461177 TGAGCTAAATTGTCGAGTAGGAGTTCTAACTCCAGACATAATTGGTGTCGGTAAAGA 461233 Score = 122 bits (134), Expect = 1e-22 Identities = 208/302 (69%), Gaps = 0/302 (0%) Strand=Plus/Plus Query 75533 AATATGCGTATAACTGCGACTGTGAATTGTTTCACTGAAAGCCCATGTTTCGATCCACGT 75592 |||||| |||||| || |||||| ||||| |||| ||||||||| ||||| || Sbjct 459126 AATATGAGTATAAGAACGTGAGTGAATAGTTTCCGAAAAAGACCATGTTTCAATCCAGGT 459185 Query 75593 TTCCATTGAAACATCAGAGGCAATCGGGAGAAACGCCAGGTTAGGGCCGCGTCCCTGAAT 75652 ||| | | | ||| ||| || ||||| || | |||||| | | ||| ||||| Sbjct 459186 TTCTAATTCCGGAATAGAAATAATTGGTAGAAAAGCAATGTTAGGACTTCTTCCTTGAAT 459245 Query 75653 GGTATCTAACAGGGTTTGATATTGCAGGTTAGAATCAAAAATGATTTTTTCGTGTTCCGG 75712 | ||||| | |||||||||| | ||| | |||||| |||||| ||||| || Sbjct 459246 AGAGTCTAATAATGTTTGATATTTTAAATTACTAAGAAAAATATGTTTTTCATGTTCAGG 459305 Query 75713 CATTTTTGCATACTGCATACGGTCTATCGACAGATCCACTTCTTCCGGTCGCCAGAAGAA 75772 | ||| | | | || | ||| || ||||| | |||||| |||| ||| || || Sbjct 459306 TAAATTTTGAAAATCTATTCTATCTCGAGAGAGATCTATTTCTTCAGGTCTCCAAAAAAA 459365 Query 75773 TGACAGTTGTTTTTCAGTCAAAGTTTCGAATACGCGATGTTTTTGTTCTTCATATCGGGC 75832 || |||||||||||| | || |||| || | || |||||| | ||||||||||| Sbjct 459366 AGAGAGTTGTTTTTCAATTAATTTTTCAAAAATATTATATTTTTGCTGATCATATCGGGC 459425 Query 75833 AA 75834 || Sbjct 459426 AA 459427 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 568463822254080