Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_029119.1 Length=127726 Score E Sequences producing significant alignments: (Bits) Value seq600 161 8e-35 >seq600 Length=17389 Score = 161 bits (178), Expect = 8e-35 Identities = 292/425 (69%), Gaps = 14/425 (3%) Strand=Plus/Plus Query 119628 AACGGTTCTGTTGCAAAGTTG---AATTTATAGTATAATTTTAACAAAA-------AGGA 119677 || ||||||||||||||||| || | | || ||| | | |||| |||| Sbjct 8709 AAGGGTTCTGTTGCAAAGTTTTCTAAACGAAATTAAAATGTAAGAAAAATGATTCGAGGA 8768 Query 119678 GTCTTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCC 119737 | | || |||| ||||| | | ||||| || || || ||| |||| |||||| Sbjct 8769 GCATGATGCATGAGATATTTTAAAGGAAAACAGTTCAAGAAAGATATTATTTTGGTAGCC 8828 Query 119738 GTTGGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGGA 119797 || |||||||| | | | | || |||||||| ||| |||||||| | || || | | Sbjct 8829 GTCGGCTACTACTGTCGTTTTTCTTTAAGTTATCGAGATGTATCTGAACTTTTGAGAGAA 8888 Query 119798 CGTGGTGTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATT 119857 ||||| || ||||||| | |||| | |||||||| || ||||||| | |||| Sbjct 8889 CGTGGAATATCGGTTCATCCTACAACCATTATGCGTTGGGTGCATGAATATGGC--AATT 8946 Query 119858 TTAT--ATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACAAATGGCGTATTGATG 119915 | || |||||||||||||||| || ||||| ||| ||| | ||||| | | |||| Sbjct 8947 TGATCTATCAAATTTGGAAGAAGAAAAATAAATCAGCACATTTCGCATGGCATTTAGATG 9006 Query 119916 AGACGTACATCAAAATAAAAGGAAAATGGAGCTATTTATATCGTGCCATTGATGCAGAGG 119975 | || ||||||||| | |||||| | ||| | ||| | |||||||| |||||| | | | Sbjct 9007 AAACCTACATCAAAGTCAAAGGAGAGTGGTGTTATCTTTATCGTGCGATTGATCGAAAAG 9066 Query 119976 GACATACATTAGATATTTGGTTGCGTAAGCAACGAGATAATCATTCAGCATATGCGTTTA 120035 || | || || |||||| | ||||| | | || |||| | || ||| ||||| Sbjct 9067 GATACACCTTGGATATTCAACTTCGTAAAACAAGGGAACATCAAGCCGCTTATATGTTTA 9126 Query 120036 TCAAA 120040 | ||| Sbjct 9127 TGAAA 9131 Score = 161 bits (178), Expect = 8e-35 Identities = 290/422 (69%), Gaps = 14/422 (3%) Strand=Plus/Plus Query 126938 GGTTCTGTTGCAAAGTTG---AATTTATAGTATAATTTTAACAAAA-------AGGAGTC 126987 ||||||||||||||||| || | | || ||| | | |||| ||||| Sbjct 8712 GGTTCTGTTGCAAAGTTTTCTAAACGAAATTAAAATGTAAGAAAAATGATTCGAGGAGCA 8771 Query 126988 TTCTGTATGAACTATTTCAGATATAAACAATTTAACAAGGATGTTATCACTGTAGCCGTT 127047 | || |||| ||||| | | ||||| || || || ||| |||| |||||||| Sbjct 8772 TGATGCATGAGATATTTTAAAGGAAAACAGTTCAAGAAAGATATTATTTTGGTAGCCGTC 8831 Query 127048 GGCTACTATCTAAGATATGCATTGAGTTATCGTGATATATCTGAAATATTAAGGGGACGT 127107 |||||||| | | | | || |||||||| ||| |||||||| | || || | |||| Sbjct 8832 GGCTACTACTGTCGTTTTTCTTTAAGTTATCGAGATGTATCTGAACTTTTGAGAGAACGT 8891 Query 127108 GGTGTAAACGTTCATCATTCAACGGTCTACCGTTGGGTTCAAGAATATGCCCCAATTTTA 127167 || || ||||||| | |||| | |||||||| || ||||||| | ||||| | Sbjct 8892 GGAATATCGGTTCATCCTACAACCATTATGCGTTGGGTGCATGAATATGGC--AATTTGA 8949 Query 127168 T--ATCAAATTTGGAAGAAAAAGCATAAAAAAGCTTATTACAAATGGCGTATTGATGAGA 127225 | |||||||||||||||| || ||||| ||| ||| | ||||| | | ||||| | Sbjct 8950 TCTATCAAATTTGGAAGAAGAAAAATAAATCAGCACATTTCGCATGGCATTTAGATGAAA 9009 Query 127226 CGTACATCAAAATAAAAGGAAAATGGAGCTATTTATATCGTGCCATTGATGCAGAGGGAC 127285 | ||||||||| | |||||| | ||| | ||| | |||||||| |||||| | | ||| Sbjct 9010 CCTACATCAAAGTCAAAGGAGAGTGGTGTTATCTTTATCGTGCGATTGATCGAAAAGGAT 9069 Query 127286 ATACATTAGATATTTGGTTGCGTAAGCAACGAGATAATCATTCAGCATATGCGTTTATTA 127345 | || || |||||| | ||||| | | || |||| | || ||| |||||| | Sbjct 9070 ACACCTTGGATATTCAACTTCGTAAAACAAGGGAACATCAAGCCGCTTATATGTTTATGA 9129 Query 127346 AA 127347 || Sbjct 9130 AA 9131 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408591547804832