Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq16 129 5e-25 seq3 109 5e-19 >seq16 Length=39632211 Score = 129 bits (142), Expect = 5e-25 Identities = 180/247 (73%), Gaps = 4/247 (2%) Strand=Plus/Plus Query 6617 ACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAAC 6676 || ||||||| |||| | || || |||| ||| ||| ||||| |||||||| || | Sbjct 38025044 ACGTGAGCGAGCATGCAAGTAAGAAGAGAGTAGGAAGCGATGTTAAACGGCACACCAAGG 38025103 Query 6677 CCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAAT 6736 ||||| || |||| || ||||| | |||||| || |||||||| | ||| || ||||| Sbjct 38025104 CCCATATCCGCCGAACGCTGATACATCTGGCACGAGAGCTCCCCTTCCGCCACATAGAAC 38025163 Query 6737 TG-GCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCACGC 6795 || ||| | |||||||||| || ||||||||||| |||||| |||||||| || Sbjct 38025164 TGCGCAAACA-TGTGGCACGGAGGAAGCGCCATCAGCTTGAGATCAGAAGGGTTCCAAGC 38025222 Query 6796 GCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATCACGTACTGC-A 6854 | | | ||| | | |||||||| || ||||| ||||||| |||| |||| | Sbjct 38025223 AGATAATATGATACGCCGATCATCAGGATTGTTCTTCATCTTGTCGATTACGT-CTGCGA 38025281 Query 6855 GCTGGTC 6861 |||| || Sbjct 38025282 GCTGATC 38025288 Score = 129 bits (142), Expect = 5e-25 Identities = 180/247 (73%), Gaps = 4/247 (2%) Strand=Plus/Minus Query 34484 GACCAGCT-GCAGTACGTGATCGACACCTTGAAGCGGAACCCTGATGACAGAAGGATCGT 34542 || ||||| |||| |||| ||||||| ||||| || |||||||| | | ||| | Sbjct 38025288 GATCAGCTCGCAG-ACGTAATCGACAAGATGAAGAACAATCCTGATGATCGGCGTATCAT 38025230 Query 34543 GATGTGCGCGTGGAACCCGAAGGATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCT 34602 | | || |||||||| |||||| ||||||||||| || |||||||||| | Sbjct 38025229 ATTATCTGCTTGGAACCCTTCTGATCTCAAGCTGATGGCGCTTCCTCCGTGCCACA-TGT 38025171 Query 34603 CTGC-CAATTCTACGTCGCGAATGGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAG 34661 ||| || ||||| || ||| | |||||||| || |||||| | ||||| || |||| | Sbjct 38025170 TTGCGCAGTTCTATGTGGCGGAAGGGGAGCTCTCGTGCCAGATGTATCAGCGTTCGGCGG 38025111 Query 34662 ACATGGGGTTAGGGGTGCCGTTCAACATTGCTAGTTACGCTCTGCTCACGTACATGATCG 34721 | ||||| | || |||||||| ||||| ||| ||| |||| || || | |||| ||| Sbjct 38025110 ATATGGGCCTTGGTGTGCCGTTTAACATCGCTTCCTACTCTCTTCTTACTTGCATGCTCG 38025051 Query 34722 CTCATGT 34728 |||| || Sbjct 38025050 CTCACGT 38025044 >seq3 Length=51870232 Score = 109 bits (120), Expect = 5e-19 Identities = 207/297 (70%), Gaps = 6/297 (2%) Strand=Plus/Plus Query 34484 GACCAGCT-GCAGTACGTGATCGACACCTTGAAGCGGAACCCTGATGACAGAAGGATCGT 34542 || ||||| |||| |||| ||||||| | ||| || |||||||| | | ||| | Sbjct 35473175 GATCAGCTCGCAG-ACGTAATCGACAAGATCAAGAACAATCCTGATGATCGGCGTATCAT 35473233 Query 34543 GATGTGCGCGTGGAACCCGAAGGATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCT 34602 | | || |||||||| || ||| ||||||||||| || |||||||||| | Sbjct 35473234 ATTATCTGCTTGGAACCCTTCTGACCTCAAGCTGATGGCGCTGCCTCCGTGCCACA-TGT 35473292 Query 34603 CTGC-CAATTCTACGTCGCGAATGGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAG 34661 ||| || ||||| || ||| | |||||||| || ||| || | ||||| || || | | Sbjct 35473293 TTGCACAGTTCTATGTGGCGGAAGGGGAGCTTTCATGCAAGATGTATCAGCGTTCAGCGG 35473352 Query 34662 ACATGGGGTTAGGGGTGCCGTTCAACATTGCTAGTTACGCTCTGCTCACGTACATGATCG 34721 | ||||| | | |||||||| ||||||||| ||| |||| || || | |||| | | Sbjct 35473353 ATATGGGCCTTGATGTGCCGTTTAACATTGCTTCCTACTCTCTTCTTACTTGCATGCTAG 35473412 Query 34722 CTCATGTCGTGGGGT-TGGTTCCTGGGGAGCTGGTGCATACGTTGGGGGATGCGCAT 34777 |||| || ||| | | | ||||| || || | | ||| | |||||||| ||| Sbjct 35473413 CTCACGT-GTGTGATCTTGTTCCCGGTGATTTTATCCATGTAATTGGGGATGCTCAT 35473468 Score = 109 bits (120), Expect = 5e-19 Identities = 207/297 (70%), Gaps = 6/297 (2%) Strand=Plus/Minus Query 6568 ATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAACCA-ACCCCACGACATGAGCGA 6626 ||| |||||||| | ||| | | || || ||||| | | | ||| || ||||| | Sbjct 35473468 ATGAGCATCCCCAATTACATGGATAAAATCACCGGGAACAAGATCACAC-ACGTGAGCTA 35473410 Query 6627 TCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCCATGTCTC 6686 |||| | || || |||| ||| ||||||||| |||||||| | | ||||| || Sbjct 35473409 GCATGCAAGTAAGAAGAGAGTAGGAAGCAATGTTAAACGGCACATCAAGGCCCATATCCG 35473350 Query 6687 CCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTG-GCAGAGG 6745 | || || ||||| | || ||| || |||||||| | ||| || ||||| || ||| | Sbjct 35473349 CTGAACGCTGATACATCTTGCATGAAAGCTCCCCTTCCGCCACATAGAACTGTGCAAACA 35473290 Query 6746 GTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCACGCGCACATCACG 6805 |||||||||| || ||||||||||| ||| || |||||||| || | | | | Sbjct 35473289 -TGTGGCACGGAGGCAGCGCCATCAGCTTGAGGTCAGAAGGGTTCCAAGCAGATAATATG 35473231 Query 6806 ATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATCACGTACTGC-AGCTGGTC 6861 || | | |||||||| || ||| | ||||||| |||| |||| ||||| || Sbjct 35473230 ATACGCCGATCATCAGGATTGTTCTTGATCTTGTCGATTACGT-CTGCGAGCTGATC 35473175 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448254689886720