Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq114 98.7 8e-16 seq2 98.7 8e-16 seq3 95.1 1e-14 seq16 89.7 4e-13 >seq114 Length=481428 Score = 98.7 bits (108), Expect = 8e-16 Identities = 105/139 (76%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 118585 TTAAAAGGAACACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCC 118644 ||||| || ||||| |||||||| |||||||| | ||| |||| ||| || |||||||| Sbjct 455419 TTAAACGGTACACCAAGACCCATATCTGCTGAGCGCTGATACATTTGACACGAGAGCTCT 455360 Query 118645 CCGTTTGCAACATAAAACTGACTTATGATGTGACATGGAGGCAGAACCATGGAACTCAGT 118704 ||||||||||| |||||||| | ||||| || ||||| || |||| | || Sbjct 455359 CCGTTTGCAACGTAAAACTGTGCAAACATGTGGCAAGGAGGAAGTGCCATCAGCTTAAGG 455300 Query 118705 TGGGCAGGATTCCAGGCTG 118723 | | ||||||||| |||| Sbjct 455299 TCAGAAGGATTCCAAGCTG 455281 >seq2 Length=31488241 Score = 98.7 bits (108), Expect = 8e-16 Identities = 105/139 (76%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 118585 TTAAAAGGAACACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCC 118644 ||||| || ||||| |||||||| |||||||| | ||| |||| ||| || |||||||| Sbjct 13040141 TTAAACGGTACACCAAGACCCATATCTGCTGAGCGCTGATACATTTGACACGAGAGCTCT 13040082 Query 118645 CCGTTTGCAACATAAAACTGACTTATGATGTGACATGGAGGCAGAACCATGGAACTCAGT 118704 ||||||||||| |||||||| | ||||| || ||||| || |||| | || Sbjct 13040081 CCGTTTGCAACGTAAAACTGTGCAAACATGTGGCAAGGAGGAAGTGCCATCAGCTTAAGG 13040022 Query 118705 TGGGCAGGATTCCAGGCTG 118723 | | ||||||||| |||| Sbjct 13040021 TCAGAAGGATTCCAAGCTG 13040003 >seq3 Length=51870232 Score = 95.1 bits (104), Expect = 1e-14 Identities = 145/207 (70%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 118488 ATAGACATGAGCATCCCCAATTGTATGTATGAATTCACCAGGTGTAAGCCCTGTCAGGTG 118547 ||| |||||||||||||||||| ||| || || ||||| || ||| | || ||| Sbjct 35473474 ATACACATGAGCATCCCCAATTACATGGATAAAATCACCGGGAACAAGATCACACACGTG 35473415 Query 118548 AGCAATCATGTATGTCAACAAACTGTAGCTGGCTACATTAAAAGGAACACCCAGACCCAT 118607 ||| | |||| | || | | | |||| || | ||||| || ||| | || ||||| Sbjct 35473414 AGCTAGCATGCAAGTAAGAAGAGAGTAGGAAGCAATGTTAAACGGCACATCAAGGCCCAT 35473355 Query 118608 GTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCGTTTGCAACATAAAACTGACT 118667 || ||||| | ||| |||| | ||| || |||||||| | || ||||| ||||| Sbjct 35473354 ATCCGCTGAACGCTGATACATCTTGCATGAAAGCTCCCCTTCCGCCACATAGAACTGTGC 35473295 Query 118668 TATGATGTGACATGGAGGCAGAACCAT 118694 | ||||| || |||||||| |||| Sbjct 35473294 AAACATGTGGCACGGAGGCAGCGCCAT 35473268 >seq16 Length=39632211 Score = 89.7 bits (98), Expect = 4e-13 Identities = 144/207 (70%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 118488 ATAGACATGAGCATCCCCAATTGTATGTATGAATTCACCAGGTGTAAGCCCTGTCAGGTG 118547 ||| || |||||||||||||| ||| | || |||||||| ||| | || ||| Sbjct 38024989 ATACACGTGAGCATCCCCAATGACATGGACAAAATCACCAGGGACAAGTTCACACACGTG 38025048 Query 118548 AGCAATCATGTATGTCAACAAACTGTAGCTGGCTACATTAAAAGGAACACCCAGACCCAT 118607 ||| | |||| | || | | | |||| || | ||||| || ||||| || ||||| Sbjct 38025049 AGCGAGCATGCAAGTAAGAAGAGAGTAGGAAGCGATGTTAAACGGCACACCAAGGCCCAT 38025108 Query 118608 GTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCGTTTGCAACATAAAACTGACT 118667 || || || | ||| |||| ||||| ||||||||||| | || ||||| ||||| Sbjct 38025109 ATCCGCCGAACGCTGATACATCTGGCACGAGAGCTCCCCTTCCGCCACATAGAACTGCGC 38025168 Query 118668 TATGATGTGACATGGAGGCAGAACCAT 118694 | ||||| || ||||| || |||| Sbjct 38025169 AAACATGTGGCACGGAGGAAGCGCCAT 38025195 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414469849224064