Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq1 93.3 3e-14 seq8 89.7 4e-13 seq6 89.7 4e-13 seq362 84.2 2e-11 seq3 82.4 5e-11 >seq1 Length=46747018 Score = 93.3 bits (102), Expect = 3e-14 Identities = 162/231 (70%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || |||||||||||||| || || || || || |||| || |||||| | Sbjct 20152321 ATGCAGATCTTTGTGAAAACTCTCACCGGAAAGACCATCACCCTTGAGGTGGAAAGCTCT 20152262 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAAT-AGCCGACAAAGAAGGTGTTCCGATGGAG 27906 ||| || |||| || | || | || | | || ||||| ||||| |||| ||| Sbjct 20152261 GACACCATCGACAA-CGTTAAAGCCAAGATTCAG--GACAAGGAAGGCATTCCTCCGGAT 20152205 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 ||||| || | || || |||||||| || | || |||| | | ||| |||| ||| Sbjct 20152204 CAGCAGAGGCTCATCTTCGCCGGAAAGCAGCTTGAAGACGGCAGAACTTTGGCCGACTAC 20152145 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 ||||||||||| ||| || | || ||||| |||||| | ||||| ||| Sbjct 20152144 AACATCCAAAAGGAGTCTACGCTCCACTTGGTCTTGCGTCTACGTGGAGGC 20152094 Score = 93.3 bits (102), Expect = 3e-14 Identities = 162/231 (70%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || |||||||||||||| || || || || || |||| || |||||| | Sbjct 20188454 ATGCAGATCTTTGTGAAAACTCTCACCGGAAAGACCATCACCCTTGAGGTGGAAAGCTCT 20188395 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAAT-AGCCGACAAAGAAGGTGTTCCGATGGAG 27906 ||| || |||| || | || | || | | || ||||| ||||| |||| ||| Sbjct 20188394 GACACCATCGACAA-CGTTAAAGCCAAGATTCAG--GACAAGGAAGGCATTCCTCCGGAT 20188338 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 ||||| || | || || |||||||| || | || |||| | | ||| |||| ||| Sbjct 20188337 CAGCAGAGGCTCATCTTCGCCGGAAAGCAGCTTGAAGACGGCAGAACTTTGGCCGACTAC 20188278 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 ||||||||||| ||| || | || ||||| |||||| | ||||| ||| Sbjct 20188277 AACATCCAAAAGGAGTCTACGCTCCACTTGGTCTTGCGTCTACGTGGAGGC 20188227 >seq8 Length=24646021 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 |||||||||||| |||| ||| ||||| || || || |||||||| || || | || Sbjct 9097853 GACAAAGAAGGTATTCCTCCGGACCAGCAGCGTTTGATCTTTGCCGGCAAGCAGCTCGAG 9097912 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 || | || | |||| | || ||||||||||| || ||| ||| | || ||||| ||| Sbjct 9097913 GATGGTCGTACCTTGGCTGACTACAACATCCAGAAGGAGTCTACTCTCCACTTGGTGTTG 9097972 Query 28003 CGTTTGCGTGGCGG 28016 ||| ||||||| || Sbjct 9097973 CGTCTGCGTGGAGG 9097986 >seq6 Length=47127078 Score = 89.7 bits (98), Expect = 4e-13 Identities = 161/231 (70%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || |||||||||||||| || || || || || |||| || |||||| | Sbjct 30236809 ATGCAGATCTTTGTGAAAACTCTCACCGGAAAGACCATCACCCTTGAGGTGGAAAGCTCT 30236750 Query 27850 G--ACGATGTACAATCGGTCAAACAAAAAAT-AGCCGACAAAGAAGGTGTTCCGATGGAG 27906 | || || |||| || | || | || | | || ||||| ||||| |||| || Sbjct 30236749 GACACCATCGACAA-CGTTAAAGCCAAGATTCAG--GACAAGGAAGGCATTCCTCCTGAT 30236693 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 ||||| || | || |||||||| || || ||||| |||| | | |||| | |||||| Sbjct 30236692 CAGCAGAGGCTCATCTTTGCCGGTAAGCAGTTGGAAGACGGCAGGACCTTGGCTGATTAC 30236633 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 || ||||| || ||| || | || |||| |||||| | ||||| ||| Sbjct 30236632 AATATCCAGAAGGAGTCTACGCTTCACCTGGTCTTGCGTCTACGTGGAGGC 30236582 >seq362 Length=95773 Score = 84.2 bits (92), Expect = 2e-11 Identities = 147/212 (69%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||||||||| |||||||| || || || || ||||| | || ||||| ||| | Sbjct 37697 ATGCAAATTTTCGTGAAAACGCTCACCGGCAAGACCATTACTCTCGAGGTCGAGAGCTCT 37756 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || |||| ||||| || || ||||| ||||| | || ||| | Sbjct 37757 GACACCATTGACAAC--GTCAAGGCTAAGATCCAGGACAAGGAAGGCATCCCTCCGGATC 37814 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| || | || |||||||| ||||| | || || | ||| | |||| | ||||||| Sbjct 37815 AGCAGAGGCTCATCTTTGCCGGTAAACAGCTAGAGGATGGACGTACCTTGGCGGATTACA 37874 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTT 27999 ||||||| || ||| ||| | ||| ||||| Sbjct 37875 ACATCCAGAAGGAGTCAACTCTCCATCTGGTT 37906 >seq3 Length=51870232 Score = 82.4 bits (90), Expect = 5e-11 Identities = 87/115 (76%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 27903 GGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGA 27962 ||| ||||| || | || ||||||||||| || ||||| || | |||| |||| | || Sbjct 22921260 GGACCAGCAGAGGCTTATCTTTGCCGGAAAGCAGTTGGAAGATGGTCGCACCTTGGCGGA 22921201 Query 27963 TTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 |||||| || || |||||| ||| | || ||||| |||||| | ||||| ||| Sbjct 22921200 TTACAATATTCAGAAAGAGTCGACTCTTCACTTGGTCTTGCGTCTACGTGGAGGC 22921146 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355856432187552