Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq16 136 3e-27 seq3 111 1e-19 seq114 95.1 1e-14 seq2 95.1 1e-14 seq1 82.4 6e-11 >seq16 Length=39632211 Score = 136 bits (150), Expect = 3e-27 Identities = 193/270 (71%), Gaps = 6/270 (2%) Strand=Plus/Plus Query 29669 TAGACGTGAGCATCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGA 29728 || ||||||||||| || | | |||||||| || || || | || | |||||| Sbjct 38024990 TACACGTGAGCATCCCCAATGACATGGACAAAATCACCAGGGACAAGTTCACACACGTGA 38025049 Query 29729 GCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACCCCGAGCCCCATG 29788 || | |||| | || || ||||||||| ||||||||||| ||||| || || ||||| Sbjct 38025050 GCGAGCATGCAAGTAAGAAGAGAGTAGGAAGCGATGTTAAACGGCACACCAAGGCCCATA 38025109 Query 29789 TCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTCACGTAAAACTG---A 29845 ||| | || | ||| || | ||||||||||||||| || || ||| || ||||| | Sbjct 38025110 TCCGCCGAACGCTGATACATCTGGCACGAGAGCTCCCCTTCCGCCACATAGAACTGCGCA 38025169 Query 29846 CACATGGCATGGCACGGAGGAAGGGCCATGAGACCCAAGTCTTTGGGGTTCCAGGCACAC 29905 ||||| |||||||||||||| ||||| || | || |||||||| ||| | Sbjct 38025170 AACATG---TGGCACGGAGGAAGCGCCATCAGCTTGAGATCAGAAGGGTTCCAAGCAGAT 38025226 Query 29906 ACGATGATGCGCCTGTCTTCTGGGTTGTTC 29935 | ||||| |||| || || || |||||| Sbjct 38025227 AATATGATACGCCGATCATCAGGATTGTTC 38025256 >seq3 Length=51870232 Score = 111 bits (122), Expect = 1e-19 Identities = 158/221 (71%), Gaps = 6/221 (3%) Strand=Plus/Minus Query 29723 ACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACCCCGAGC 29782 |||||||| | |||| | || || ||||||||| || |||||||| ||||| | || Sbjct 35473419 ACGTGAGCTAGCATGCAAGTAAGAAGAGAGTAGGAAGCAATGTTAAACGGCACATCAAGG 35473360 Query 29783 CCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTCACGTAAAAC 29842 ||||| ||| |||| | ||| || | || ||| || ||||| || || ||| || ||| Sbjct 35473359 CCCATATCCGCTGAACGCTGATACATCTTGCATGAAAGCTCCCCTTCCGCCACATAGAAC 35473300 Query 29843 TG---ACACATGGCATGGCACGGAGGAAGGGCCATGAGACCCAAGTCTTTGGGGTTCCAG 29899 || | ||||| ||||||||||| || ||||| || | ||| |||||||| Sbjct 35473299 TGTGCAAACATG---TGGCACGGAGGCAGCGCCATCAGCTTGAGGTCAGAAGGGTTCCAA 35473243 Query 29900 GCACACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGAT 29940 ||| | | ||||| |||| || || || |||||| |||| Sbjct 35473242 GCAGATAATATGATACGCCGATCATCAGGATTGTTCTTGAT 35473202 >seq114 Length=481428 Score = 95.1 bits (104), Expect = 1e-14 Identities = 155/222 (70%), Gaps = 6/222 (3%) Strand=Plus/Minus Query 29722 GACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACCCCGAG 29781 ||| ||||| | ||| | || || || ||||| ||| |||||||| || || || || Sbjct 455462 GACATGAGCTAGGATGCATGTAAGAAGTGAGTATGAGGCAATGTTAAACGGTACACCAAG 455403 Query 29782 CCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTCACGTAAAA 29841 ||||| || |||| | ||| || | || |||||||||||||||| |||||||| Sbjct 455402 ACCCATATCTGCTGAGCGCTGATACATTTGACACGAGAGCTCTCCGTTTGCAACGTAAAA 455343 Query 29842 CTG---ACACATGGCATGGCACGGAGGAAGGGCCATGAGACCCAAGTCTTTGGGGTTCCA 29898 ||| | ||||| ||||| |||||||| ||||| || | ||| || ||||| Sbjct 455342 CTGTGCAAACATG---TGGCAAGGAGGAAGTGCCATCAGCTTAAGGTCAGAAGGATTCCA 455286 Query 29899 GGCACACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGAT 29940 || ||| || || || | || || || |||||| |||| Sbjct 455285 AGCTGACATTATTATCCGGCGATCATCAGGATTGTTCTTGAT 455244 >seq2 Length=31488241 Score = 95.1 bits (104), Expect = 1e-14 Identities = 155/222 (70%), Gaps = 6/222 (3%) Strand=Plus/Minus Query 29722 GACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACCCCGAG 29781 ||| ||||| | ||| | || || || ||||| ||| |||||||| || || || || Sbjct 13040184 GACATGAGCTAGGATGCATGTAAGAAGTGAGTATGAGGCAATGTTAAACGGTACACCAAG 13040125 Query 29782 CCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTCACGTAAAA 29841 ||||| || |||| | ||| || | || |||||||||||||||| |||||||| Sbjct 13040124 ACCCATATCTGCTGAGCGCTGATACATTTGACACGAGAGCTCTCCGTTTGCAACGTAAAA 13040065 Query 29842 CTG---ACACATGGCATGGCACGGAGGAAGGGCCATGAGACCCAAGTCTTTGGGGTTCCA 29898 ||| | ||||| ||||| |||||||| ||||| || | ||| || ||||| Sbjct 13040064 CTGTGCAAACATG---TGGCAAGGAGGAAGTGCCATCAGCTTAAGGTCAGAAGGATTCCA 13040008 Query 29899 GGCACACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGAT 29940 || ||| || || || | || || || |||||| |||| Sbjct 13040007 AGCTGACATTATTATCCGGCGATCATCAGGATTGTTCTTGAT 13039966 >seq1 Length=46747018 Score = 82.4 bits (90), Expect = 6e-11 Identities = 152/222 (68%), Gaps = 6/222 (3%) Strand=Plus/Minus Query 29722 GACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACCCCGAG 29781 ||| ||||| | || | || || || ||||| ||| |||||||| || || || || Sbjct 3084334 GACATGAGCGAGGATACATGTAAGAAGGGAGTATGAGGCAATGTTAAACGGTACACCAAG 3084275 Query 29782 CCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTCACGTAAAA 29841 ||||| || |||| | ||| || | || || || |||||||| | | |||||||| Sbjct 3084274 ACCCATATCAGCTGAGCGCTGATACATTTGACATGAAAGCTCTCCATTGGCAACGTAAAA 3084215 Query 29842 CTG---ACACATGGCATGGCACGGAGGAAGGGCCATGAGACCCAAGTCTTTGGGGTTCCA 29898 ||| | ||||| ||||| |||||||| ||||| || | ||| || ||||| Sbjct 3084214 CTGAGCAAACATG---TGGCATGGAGGAAGTGCCATCAGCTTAAGGTCAGAAGGATTCCA 3084158 Query 29899 GGCACACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGAT 29940 || ||| || || || | || || || |||||| |||| Sbjct 3084157 AGCCGACATTATAATCCGTCGATCGTCAGGATTGTTCTTGAT 3084116 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406156388643136