Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq16 114 1e-20 seq114 91.5 1e-13 seq2 91.5 1e-13 seq1 89.7 4e-13 seq3 84.2 2e-11 >seq16 Length=39632211 Score = 114 bits (126), Expect = 1e-20 Identities = 196/283 (69%), Gaps = 6/283 (2%) Strand=Plus/Plus Query 27150 CACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAG 27209 ||||||| | || |||||||| || || | | |||||||| || || || | || Sbjct 38024977 CACGTGAGTTCGATACACGTGAGCATCCCCAATGACATGGACAAAATCACCAGGGACAAG 38025036 Query 27210 CCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTAC 27269 | |||||||| | |||| | || || ||||||||| ||||||||||| || || Sbjct 38025037 TTCACACACGTGAGCGAGCATGCAAGTAAGAAGAGAGTAGGAAGCGATGTTAAACGGCAC 38025096 Query 27270 CCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTTAC 27329 || || ||||| ||| |||| | ||| || | ||| ||||||||||| || || || Sbjct 38025097 ACCAAGGCCCATATCCGCCGAACGCTGATACATCTGGCACGAGAGCTCCCCTTCCGCCAC 38025156 Query 27330 GTAAAACTG---ACATATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGG 27386 || ||||| | | || ||||||||||||||| ||||| || | || || Sbjct 38025157 ATAGAACTGCGCAAACAT---GTGGCACGGAGGAAGCGCCATCAGCTTGAGATCAGAAGG 38025213 Query 27387 GTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTC 27429 |||||| || | | ||||| |||| || || || |||||| Sbjct 38025214 GTTCCAAGCAGATAATATGATACGCCGATCATCAGGATTGTTC 38025256 >seq114 Length=481428 Score = 91.5 bits (100), Expect = 1e-13 Identities = 154/222 (69%), Gaps = 6/222 (3%) Strand=Plus/Minus Query 27216 GACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAG 27275 ||| ||||| | ||| | || || || ||||| ||| |||||||| ||||| || || Sbjct 455462 GACATGAGCTAGGATGCATGTAAGAAGTGAGTATGAGGCAATGTTAAACGGTACACCAAG 455403 Query 27276 CCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTTACGTAAAA 27335 ||||| || | || | ||| || | ||||||||||||||||| | |||||||| Sbjct 455402 ACCCATATCTGCTGAGCGCTGATACATTTGACACGAGAGCTCTCCGTTTGCAACGTAAAA 455343 Query 27336 CTG---ACATATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCA 27392 ||| | | || |||||| |||||||| ||||| || | ||| || ||||| Sbjct 455342 CTGTGCAAACAT---GTGGCAAGGAGGAAGTGCCATCAGCTTAAGGTCAGAAGGATTCCA 455286 Query 27393 GGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGAT 27434 || ||| || || || | || || || |||||| |||| Sbjct 455285 AGCTGACATTATTATCCGGCGATCATCAGGATTGTTCTTGAT 455244 >seq2 Length=31488241 Score = 91.5 bits (100), Expect = 1e-13 Identities = 154/222 (69%), Gaps = 6/222 (3%) Strand=Plus/Minus Query 27216 GACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAG 27275 ||| ||||| | ||| | || || || ||||| ||| |||||||| ||||| || || Sbjct 13040184 GACATGAGCTAGGATGCATGTAAGAAGTGAGTATGAGGCAATGTTAAACGGTACACCAAG 13040125 Query 27276 CCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTTACGTAAAA 27335 ||||| || | || | ||| || | ||||||||||||||||| | |||||||| Sbjct 13040124 ACCCATATCTGCTGAGCGCTGATACATTTGACACGAGAGCTCTCCGTTTGCAACGTAAAA 13040065 Query 27336 CTG---ACATATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCA 27392 ||| | | || |||||| |||||||| ||||| || | ||| || ||||| Sbjct 13040064 CTGTGCAAACAT---GTGGCAAGGAGGAAGTGCCATCAGCTTAAGGTCAGAAGGATTCCA 13040008 Query 27393 GGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGAT 27434 || ||| || || || | || || || |||||| |||| Sbjct 13040007 AGCTGACATTATTATCCGGCGATCATCAGGATTGTTCTTGAT 13039966 >seq1 Length=46747018 Score = 89.7 bits (98), Expect = 4e-13 Identities = 151/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 27216 GACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAG 27275 ||| ||||| | || | || || || ||||| ||| |||||||| ||||| || || Sbjct 3084334 GACATGAGCGAGGATACATGTAAGAAGGGAGTATGAGGCAATGTTAAACGGTACACCAAG 3084275 Query 27276 CCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTTACGTAAAA 27335 ||||| || | || | ||| || | ||||| || |||||||||| | |||||||| Sbjct 3084274 ACCCATATCAGCTGAGCGCTGATACATTTGACATGAAAGCTCTCCATTGGCAACGTAAAA 3084215 Query 27336 CTGACATATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGC 27395 |||| | |||||| |||||||| ||||| || | ||| || ||||| || Sbjct 3084214 CTGAGCAAACATGTGGCATGGAGGAAGTGCCATCAGCTTAAGGTCAGAAGGATTCCAAGC 3084155 Query 27396 GCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGAT 27434 ||| || || || | || || || |||||| |||| Sbjct 3084154 CGACATTATAATCCGTCGATCGTCAGGATTGTTCTTGAT 3084116 >seq3 Length=51870232 Score = 84.2 bits (92), Expect = 2e-11 Identities = 152/221 (69%), Gaps = 6/221 (3%) Strand=Plus/Minus Query 27217 ACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGC 27276 |||||||| | |||| | || || ||||||||| || |||||||| || || | || Sbjct 35473419 ACGTGAGCTAGCATGCAAGTAAGAAGAGAGTAGGAAGCAATGTTAAACGGCACATCAAGG 35473360 Query 27277 CCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTTACGTAAAAC 27336 ||||| ||| | || | ||| || | || || || ||||| || || || || ||| Sbjct 35473359 CCCATATCCGCTGAACGCTGATACATCTTGCATGAAAGCTCCCCTTCCGCCACATAGAAC 35473300 Query 27337 TG---ACATATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAG 27393 || | | ||| ||||||||||| || ||||| || | ||| |||||||| Sbjct 35473299 TGTGCAAACATG---TGGCACGGAGGCAGCGCCATCAGCTTGAGGTCAGAAGGGTTCCAA 35473243 Query 27394 GCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGAT 27434 || | | ||||| |||| || || || |||||| |||| Sbjct 35473242 GCAGATAATATGATACGCCGATCATCAGGATTGTTCTTGAT 35473202 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369501003364256