Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_030913.1 Length=58308 Score E Sequences producing significant alignments: (Bits) Value seq1 197 5e-46 >seq1 Length=46747018 Score = 197 bits (218), Expect = 5e-46 Identities = 284/406 (70%), Gaps = 20/406 (5%) Strand=Plus/Minus Query 34008 TACGGGTACGGCGAGGCGTTCACTCGGAACCC--GAAGCAATCCACCGACTGCTCGGGAC 34065 ||||| ||||||| ||||||||| | ||||| || || |||||||||||||||| | Sbjct 34902886 TACGGCTACGGCGGGGCGTTCACACTCAACCCCCGAGACA--CCACCGACTGCTCGGGTC 34902829 Query 34066 TCGTTCTGCAGACCGGTGCATGGTTCGCCGGACGCACCGACTGGGTCGGAAACCGCTACG 34125 | ||||||||||| | || |||| || ||| || | |||||| |||||||||| |||| Sbjct 34902828 TGGTTCTGCAGACGGCAGCCTGGTACGGCGGTCGGAAGGACTGGATCGGAAACCGGTACG 34902769 Query 34126 GCTCAACCGAATCGTTCCGCCTCGACTACAAGATCGTCTACGACCTCTGGTTCAAGCGCA 34185 |||| || || ||||| |||||| |||||||||||||||||||| |||||| ||| Sbjct 34902768 GCTCGACTGAGAGCTTCCGGCTCGACCACAAGATCGTCTACGACCTCGGGTTCAGGCGAC 34902709 Query 34186 TGCCGCGCGGCGGCCTGTCGGCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCAGC 34245 | || | || ||| | |||| ||||| Sbjct 34902708 TCCCTCCGGGAGGCGTTGCGGCCCTGGGATTCACCCCGGTCATGCTCGTCGGGCTCCAGC 34902649 Query 34246 ACGGTGGCGGCGGAATCTACTCGCACACCGCCTGCACGCTGATGGGAATGGACCACCCCG 34305 |||| ||||| || |||||||||||||| |||||||||||| |||||| ||||| Sbjct 34902648 ACGGCGGCGGGGGCCGGTACTCGCACACCGCTTGCACGCTGATGACGATGGACATCCCCG 34902589 Query 34306 GCGGCGAGGTCAAACAGTC-CGC-TCGCGGCGTCGACTGGGAATCCC------AGGGCAA 34357 | ||| ||| || ||| ||| || |||||||||||||| |||| | | ||| Sbjct 34902588 GTGGCCCGGTGAA--GGTCTCGCAACGAGGCGTCGACTGGGAGTCCCGAGGAGAAGTCAA 34902531 Query 34358 CGGC------GTCTTCTACTACGAAGGCGCCCGCGCGTGGAACGAC 34397 |||| || ||| |||||| ||||| ||||| ||||||||| Sbjct 34902530 CGGCGTGGGGGTGTTCCTCTACGACGGCGCACGCGCCTGGAACGAC 34902485 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 186460953178240