Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_030930.1 Length=46570 Score E Sequences producing significant alignments: (Bits) Value seq1 183 9e-42 >seq1 Length=46747018 Score = 183 bits (202), Expect = 9e-42 Identities = 280/401 (70%), Gaps = 21/401 (5%) Strand=Plus/Minus Query 18965 TACGGGTACGGCGAGGCATTCACCCGTAACCCTCGCCAGTCGACCGACTGCTCCGGGCTC 19024 ||||| ||||||| ||| ||||| | ||||| || | | ||||||||||| || || Sbjct 34902886 TACGGCTACGGCGGGGCGTTCACACTCAACCCCCGAGACACCACCGACTGCTCGGGTCTG 34902827 Query 19025 GTCCTGCAGTCGGGTGCGATCCTCGGTGGCCGCACCGACTGGGTGGGAAACCGCTACGGA 19084 || |||||| ||| || ||| || || | |||||| | |||||||| ||||| Sbjct 34902826 GTTCTGCAGACGGCAGCCTGGTACGGCGGTCGGAAGGACTGGATCGGAAACCGGTACGGC 34902767 Query 19085 TCGACCGAGTCGTTCCGCCTCGACTACGCGATCGTGTACGCGCTGGGATTCAAGCGCATG 19144 ||||| ||| ||||| |||||| || |||||| |||| || || |||| ||| | Sbjct 34902766 TCGACTGAGAGCTTCCGGCTCGACCACAAGATCGTCTACGACCTCGGGTTCAGGCGACTC 34902707 Query 19145 CCTCGAGGTGG-GTTGCCG--------TTCGTGCCGGTGATGAAGGTCGGTCTGCAGCAC 19195 |||| || || ||||| | ||| ||||| ||| ||||| || |||||| Sbjct 34902706 CCTCCGGGAGGCGTTGCGGCCCTGGGATTCACCCCGGTCATGCTCGTCGGGCTCCAGCAC 34902647 Query 19196 GGTGGCGGCGGGATCTACTCCCACACCGCGTGCACGCTGATGTTCCTCGACAAGCCCGGT 19255 || ||||| || ||||| |||||||| |||||||||||| | |||| |||||| Sbjct 34902646 GGCGGCGGGGGCCGGTACTCGCACACCGCTTGCACGCTGATGACGATGGACATCCCCGGT 34902587 Query 19256 GGCCCGATCAAGGAGTCTGCGCGGGGCGTCGACTGGGAGTCCC------------AGGGC 19303 |||||| | |||| || || ||||||||||||||||||| | ||| Sbjct 34902586 GGCCCGGTGAAGGTCTCGCAACGAGGCGTCGACTGGGAGTCCCGAGGAGAAGTCAACGGC 34902527 Query 19304 GCCGGCGTCTTTTACTACGAGGGCGCCCGTGCCTGGAATGA 19344 | || || || |||||| ||||| || |||||||| || Sbjct 34902526 GTGGGGGTGTTCCTCTACGACGGCGCACGCGCCTGGAACGA 34902486 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148899966934784