Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_030953.1 Length=170650 Score E Sequences producing significant alignments: (Bits) Value seq82 219 5e-52 >seq82 Length=657493 Score = 219 bits (242), Expect = 5e-52 Identities = 323/453 (71%), Gaps = 12/453 (3%) Strand=Plus/Plus Query 88492 CATCAAATCATTCAGTTGAACGCCATAATCCATATGACGAATGCGGTTTTCTTCTACGCC 88551 |||||| | ||| | ||| || ||||||| | ||||| | | |||||||| | ||| Sbjct 460820 CATCAATTTATTAATTTGTACTGCATAATCAACGTGACGTACTCTATTTTCTTCAATGCC 460879 Query 88552 TTTGTTATTTTTCAAAACGAGAAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGC 88611 | |||||||| ||||| | | | |||||| ||| |||||||| || |||||| | Sbjct 460880 CCTATTATTTTTTAAAACTAATAAACTTTCAATTTCAAAATGCCATATTGGATAAAATAT 460939 Query 88612 AGTAGCAGCGCCGCCACGAATTCCACCCTGTGAACATGATTTAACTGCAGTCTGAAAATG 88671 ||| || || || || | || ||| || || ||||| ||||| || ||| | |||||||| Sbjct 460940 AGTTGCCGCTCCACCTCTAACTCCTCCTTGAGAACAGGATTTTACAGCACTTTGAAAATG 460999 Query 88672 TTTCCAAAAAGGAATAACACCAGTATGACGTACTTCACCCATGCCAATCTTAGAACCTTC 88731 ||| ||||||||||| |||||||||| | |||| || | | ||| | |||| | Sbjct 461000 TTTATAAAAAGGAATACAACCAGTATGAAATGCTTCGCCATTTCTAATAGGACTACCTAC 461059 Query 88732 GGCACGAATCATACCAACGTTAATACCAATTCCAGCGCGTTTGGAGATATACTCAACAAT 88791 |||||||| | ||| | |||||||||||||| || |||| || | ||| | ||||| Sbjct 461060 TGCACGAATTTTTCCAGCATTAATACCAATTCCTGCTCGTTGAGAAACATATTTTACAAT 461119 Query 88792 TGA---AGCAGAAGCCTTATTGATAGACTTTA-ATGA--ATCACCTGCCTCAATAACAAC 88845 || || || ||| ||| ||||| | || || | ||||| | ||||| | ||| Sbjct 461120 AGAACTAGTAGTAGCGTTA---ATAGAATCTAGATTATCATCACAT---TCAATTAAAAC 461173 Query 88846 GCATGAACTAAACTGTCGAGTTGGAGTACGACAACCAGCCATAATAGGAGTTGGCAATGA 88905 ||||| ||||| |||||||| ||||| | | |||| |||||| || || || || || Sbjct 461174 ACATGAGCTAAATTGTCGAGTAGGAGTTCTAACTCCAGACATAATTGGTGTCGGTAAAGA 461233 Query 88906 AATCTGTCGAGTAGATACTGCTTCATAAAAACG 88938 ||| | ||| || | || | ||||||||| Sbjct 461234 AATTTTGAAAGTTGAAATGGCATTATAAAAACG 461266 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 545942609625600