Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_031004.1 Length=41857 Score E Sequences producing significant alignments: (Bits) Value seq1 190 5e-44 >seq1 Length=46747018 Score = 190 bits (210), Expect = 5e-44 Identities = 306/440 (70%), Gaps = 16/440 (4%) Strand=Plus/Minus Query 20848 GTCGACGCGAGGTGCCGCGCCCGGGACGGCCTGTACTACGGGTACGGCGAAGCATTCAAC 20907 ||| ||| | ||||||||| || | ||| ||||| ||||||| || |||| Sbjct 34902922 GTCCACGACATGTGCCGCGCTCGCGCTGGCAACAGGTACGGCTACGGCGGGGCGTTCACA 34902863 Query 20908 GAGAACCC--GAGGCAGTCCACCGATTGCTCTGGCCTCGTGTTGCAGAGCGGAGCGTGGT 20965 ||||| ||| || ||||||| ||||| || || || |||||| | ||| |||| Sbjct 34902862 CTCAACCCCCGAGACA--CCACCGACTGCTCGGGTCTGGTTCTGCAGACGGCAGCCTGGT 34902805 Query 20966 ACGCCGGTCGCACCGACTGGGTCAACAACCGTTACGGCTCAACAGAATCATTCCGACTCG 21025 ||| |||||| | |||||| || ||||| |||||||| || || ||||| |||| Sbjct 34902804 ACGGCGGTCGGAAGGACTGGATCGGAAACCGGTACGGCTCGACTGAGAGCTTCCGGCTCG 34902745 Query 21026 GCTACGCGATCGTGTTCTCGATCGGGTTCAAGCGCATGCCGCGCGGCGGGCTGTCGGCAC 21085 | || |||||| | | ||||||||| ||| | || | || || | |||| | Sbjct 34902744 ACCACAAGATCGTCTACGACCTCGGGTTCAGGCGACTCCCTCCGGGAGGCGTTGCGGCCC 34902685 Query 21086 TGCCGTTCAAGCCGATCATGCTCGTCGGGTTGCAGCACGGCGGCGGTGGCATCTACTCCC 21145 || |||| ||| |||||||||||||| | |||||||||||||| ||| ||||| | Sbjct 34902684 TGGGATTCACCCCGGTCATGCTCGTCGGGCTCCAGCACGGCGGCGGGGGCCGGTACTCGC 34902625 Query 21146 ACACCGCGTGCACGCTGATGGGAATGGACAAGCCTGGCGGCGAGGTCAAGCAGTCAGCCC 21205 ||||||| |||||||||||| ||||||| || || ||| ||| ||| || | Sbjct 34902624 ACACCGCTTGCACGCTGATGACGATGGACATCCCCGGTGGCCCGGTGAAGGTCTCGCAAC 34902565 Query 21206 GCGGCGTCGACTGGGAATCAC------------AGGGCGCTGGCGTCTTCTACTACGAAG 21253 | |||||||||||||| || | | |||| || || ||| |||||| | Sbjct 34902564 GAGGCGTCGACTGGGAGTCCCGAGGAGAAGTCAACGGCGTGGGGGTGTTCCTCTACGACG 34902505 Query 21254 GCGCGCGTGCATGGAACGAC 21273 |||| || || ||||||||| Sbjct 34902504 GCGCACGCGCCTGGAACGAC 34902485 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 133818613368128