Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15]
1,376 sequences; 930,507,853 total letters
Query= NC_031015.1
Length=26504
Score E
Sequences producing significant alignments: (Bits) Value
seq137 109 9e-20
>seq137
Length=409738
Score = 109 bits (120), Expect = 9e-20
Identities = 287/432 (66%), Gaps = 22/432 (5%)
Strand=Plus/Minus
Query 22987 GAAAGTTGGATTATATGTTGGTCATCATATGTATGAGCCTTTTGGTATGAGTCAAGTTCA 23046
||||||||| || ||||| |||| || |||||| | | ||| | || | || |
Sbjct 39454 GAAAGTTGGTTTTTATGTAAGTCACCACATGTATAACAAATATGGATTAAGCAATGTGAA 39395
Query 23047 ATCTGACTTTGTATGGATTCCGCGATATGGTGGTAGTAAACCTAAATATCCTTGCGATAT 23106
| |||| || | |||||||| || |||||||| || ||||||||| |||||||||||
Sbjct 39394 AGCTGATTTCCTGTGGATTCCTCGTTATGGTGGACCTAGACCTAAATACCCTTGCGATAT 39335
Query 23107 TTGGCAATACAC------TGAAACTGG-TCACACACCG--GGAATTGGTAAATGTGATTT 23157
|||||||||| | ||||| || | || ||| | || || ||||||
Sbjct 39334 TTGGCAATACGCGGACGGGGAAACAGGAGGATGGCTCGATGGAGTCGGGAAGGTTGATTT 39275
Query 23158 GAATCAATTGATTGGTAGTAAAAATCTAGCTTACTTCACTGGTCAAGATGATCAAACACC 23217
||| || || || | |||| | || ||| || | || | || | | | |
Sbjct 39274 AAATTCTTTAATCGGAAATAAACCTTTATCTTGGTTTATAGGAAACGAGCAACCTATTTC 39215
Query 23218 TAA---AGGATATCAATATGTAAGAAGTGGTGGATTTGGTAGTGATTTAATAGGT----G 23270
||| |||||||||||||| | |||||||||||| ||| || ||| |
Sbjct 39214 TAATGGCGGATATCAATATGTTAAGTCTGGTGGATTTGG----CGTTTCATTGGTTCCGG 39159
Query 23271 AAGTTTCAACTAAAATGAATGAACTTGGAACAAAAGGTAGAGTTATTTTAAATCCGAGTG 23330
|||| | || | ||| || | ||| || ||||| |||||||| |||| | |
Sbjct 39158 AAGTATTAAATGCTATGGCCGAGCGTGGTACTAAAGGACAAGTTATTTCTGATCC-ATTA 39100
Query 23331 A-AGGTCTTGCATATATTCAAACTGATGTAATGCCAAATGAAGAATTAGATAAAATAACT 23389
| ||| ||||| | ||||| || || |||| ||| |||||||||||||| |||
Sbjct 39099 ACCGGTACAGCATACTTGCAAACGGAAGTGTTGCCGAATCCTGAATTAGATAAAATTACT 39040
Query 23390 TGGTGGATGGAT 23401
||||||||||||
Sbjct 39039 TGGTGGATGGAT 39028
Score = 109 bits (120), Expect = 9e-20
Identities = 287/432 (66%), Gaps = 22/432 (5%)
Strand=Plus/Minus
Query 22987 GAAAGTTGGATTATATGTTGGTCATCATATGTATGAGCCTTTTGGTATGAGTCAAGTTCA 23046
||||||||| || ||||| |||| || |||||| | | ||| | || | || |
Sbjct 82175 GAAAGTTGGTTTTTATGTAAGTCACCACATGTATAACAAATATGGATTAAGCAATGTGAA 82116
Query 23047 ATCTGACTTTGTATGGATTCCGCGATATGGTGGTAGTAAACCTAAATATCCTTGCGATAT 23106
| |||| || | |||||||| || |||||||| || ||||||||| |||||||||||
Sbjct 82115 AGCTGATTTCCTGTGGATTCCTCGTTATGGTGGACCTAGACCTAAATACCCTTGCGATAT 82056
Query 23107 TTGGCAATACAC------TGAAACTGG-TCACACACCG--GGAATTGGTAAATGTGATTT 23157
|||||||||| | ||||| || | || ||| | || || ||||||
Sbjct 82055 TTGGCAATACGCGGACGGGGAAACAGGAGGATGGCTCGATGGAGTCGGGAAGGTTGATTT 81996
Query 23158 GAATCAATTGATTGGTAGTAAAAATCTAGCTTACTTCACTGGTCAAGATGATCAAACACC 23217
||| || || || | |||| | || ||| || | || | || | | | |
Sbjct 81995 AAATTCTTTAATCGGAAATAAACCTTTATCTTGGTTTATAGGAAACGAGCAACCTATTTC 81936
Query 23218 TAA---AGGATATCAATATGTAAGAAGTGGTGGATTTGGTAGTGATTTAATAGGT----G 23270
||| |||||||||||||| | |||||||||||| ||| || ||| |
Sbjct 81935 TAATGGCGGATATCAATATGTTAAGTCTGGTGGATTTGG----CGTTTCATTGGTTCCGG 81880
Query 23271 AAGTTTCAACTAAAATGAATGAACTTGGAACAAAAGGTAGAGTTATTTTAAATCCGAGTG 23330
|||| | || | ||| || | ||| || ||||| |||||||| |||| | |
Sbjct 81879 AAGTATTAAATGCTATGGCCGAGCGTGGTACTAAAGGACAAGTTATTTCTGATCC-ATTA 81821
Query 23331 A-AGGTCTTGCATATATTCAAACTGATGTAATGCCAAATGAAGAATTAGATAAAATAACT 23389
| ||| ||||| | ||||| || || |||| ||| |||||||||||||| |||
Sbjct 81820 ACCGGTACAGCATACTTGCAAACGGAAGTGTTGCCGAATCCTGAATTAGATAAAATTACT 81761
Query 23390 TGGTGGATGGAT 23401
||||||||||||
Sbjct 81760 TGGTGGATGGAT 81749
Score = 109 bits (120), Expect = 9e-20
Identities = 287/432 (66%), Gaps = 22/432 (5%)
Strand=Plus/Minus
Query 22987 GAAAGTTGGATTATATGTTGGTCATCATATGTATGAGCCTTTTGGTATGAGTCAAGTTCA 23046
||||||||| || ||||| |||| || |||||| | | ||| | || | || |
Sbjct 124896 GAAAGTTGGTTTTTATGTAAGTCACCACATGTATAACAAATATGGATTAAGCAATGTGAA 124837
Query 23047 ATCTGACTTTGTATGGATTCCGCGATATGGTGGTAGTAAACCTAAATATCCTTGCGATAT 23106
| |||| || | |||||||| || |||||||| || ||||||||| |||||||||||
Sbjct 124836 AGCTGATTTCCTGTGGATTCCTCGTTATGGTGGACCTAGACCTAAATACCCTTGCGATAT 124777
Query 23107 TTGGCAATACAC------TGAAACTGG-TCACACACCG--GGAATTGGTAAATGTGATTT 23157
|||||||||| | ||||| || | || ||| | || || ||||||
Sbjct 124776 TTGGCAATACGCGGACGGGGAAACAGGAGGATGGCTCGATGGAGTCGGGAAGGTTGATTT 124717
Query 23158 GAATCAATTGATTGGTAGTAAAAATCTAGCTTACTTCACTGGTCAAGATGATCAAACACC 23217
||| || || || | |||| | || ||| || | || | || | | | |
Sbjct 124716 AAATTCTTTAATCGGAAATAAACCTTTATCTTGGTTTATAGGAAACGAGCAACCTATTTC 124657
Query 23218 TAA---AGGATATCAATATGTAAGAAGTGGTGGATTTGGTAGTGATTTAATAGGT----G 23270
||| |||||||||||||| | |||||||||||| ||| || ||| |
Sbjct 124656 TAATGGCGGATATCAATATGTTAAGTCTGGTGGATTTGG----CGTTTCATTGGTTCCGG 124601
Query 23271 AAGTTTCAACTAAAATGAATGAACTTGGAACAAAAGGTAGAGTTATTTTAAATCCGAGTG 23330
|||| | || | ||| || | ||| || ||||| |||||||| |||| | |
Sbjct 124600 AAGTATTAAATGCTATGGCCGAGCGTGGTACTAAAGGACAAGTTATTTCTGATCC-ATTA 124542
Query 23331 A-AGGTCTTGCATATATTCAAACTGATGTAATGCCAAATGAAGAATTAGATAAAATAACT 23389
| ||| ||||| | ||||| || || |||| ||| |||||||||||||| |||
Sbjct 124541 ACCGGTACAGCATACTTGCAAACGGAAGTGTTGCCGAATCCTGAATTAGATAAAATTACT 124482
Query 23390 TGGTGGATGGAT 23401
||||||||||||
Sbjct 124481 TGGTGGATGGAT 124470
Score = 109 bits (120), Expect = 9e-20
Identities = 287/432 (66%), Gaps = 22/432 (5%)
Strand=Plus/Minus
Query 22987 GAAAGTTGGATTATATGTTGGTCATCATATGTATGAGCCTTTTGGTATGAGTCAAGTTCA 23046
||||||||| || ||||| |||| || |||||| | | ||| | || | || |
Sbjct 167985 GAAAGTTGGTTTTTATGTAAGTCACCACATGTATAACAAATATGGATTAAGCAATGTGAA 167926
Query 23047 ATCTGACTTTGTATGGATTCCGCGATATGGTGGTAGTAAACCTAAATATCCTTGCGATAT 23106
| |||| || | |||||||| || |||||||| || ||||||||| |||||||||||
Sbjct 167925 AGCTGATTTCCTGTGGATTCCTCGTTATGGTGGACCTAGACCTAAATACCCTTGCGATAT 167866
Query 23107 TTGGCAATACAC------TGAAACTGG-TCACACACCG--GGAATTGGTAAATGTGATTT 23157
|||||||||| | ||||| || | || ||| | || || ||||||
Sbjct 167865 TTGGCAATACGCGGACGGGGAAACAGGAGGATGGCTCGATGGAGTCGGGAAGGTTGATTT 167806
Query 23158 GAATCAATTGATTGGTAGTAAAAATCTAGCTTACTTCACTGGTCAAGATGATCAAACACC 23217
||| || || || | |||| | || ||| || | || | || | | | |
Sbjct 167805 AAATTCTTTAATCGGAAATAAACCTTTATCTTGGTTTATAGGAAACGAGCAACCTATTTC 167746
Query 23218 TAA---AGGATATCAATATGTAAGAAGTGGTGGATTTGGTAGTGATTTAATAGGT----G 23270
||| |||||||||||||| | |||||||||||| ||| || ||| |
Sbjct 167745 TAATGGCGGATATCAATATGTTAAGTCTGGTGGATTTGG----CGTTTCATTGGTTCCGG 167690
Query 23271 AAGTTTCAACTAAAATGAATGAACTTGGAACAAAAGGTAGAGTTATTTTAAATCCGAGTG 23330
|||| | || | ||| || | ||| || ||||| |||||||| |||| | |
Sbjct 167689 AAGTATTAAATGCTATGGCCGAGCGTGGTACTAAAGGACAAGTTATTTCTGATCC-ATTA 167631
Query 23331 A-AGGTCTTGCATATATTCAAACTGATGTAATGCCAAATGAAGAATTAGATAAAATAACT 23389
| ||| ||||| | ||||| || || |||| ||| |||||||||||||| |||
Sbjct 167630 ACCGGTACAGCATACTTGCAAACGGAAGTGTTGCCGAATCCTGAATTAGATAAAATTACT 167571
Query 23390 TGGTGGATGGAT 23401
||||||||||||
Sbjct 167570 TGGTGGATGGAT 167559
Score = 109 bits (120), Expect = 9e-20
Identities = 287/432 (66%), Gaps = 22/432 (5%)
Strand=Plus/Minus
Query 22987 GAAAGTTGGATTATATGTTGGTCATCATATGTATGAGCCTTTTGGTATGAGTCAAGTTCA 23046
||||||||| || ||||| |||| || |||||| | | ||| | || | || |
Sbjct 339019 GAAAGTTGGTTTTTATGTAAGTCACCACATGTATAACAAATATGGATTAAGCAATGTGAA 338960
Query 23047 ATCTGACTTTGTATGGATTCCGCGATATGGTGGTAGTAAACCTAAATATCCTTGCGATAT 23106
| |||| || | |||||||| || |||||||| || ||||||||| |||||||||||
Sbjct 338959 AGCTGATTTCCTGTGGATTCCTCGTTATGGTGGACCTAGACCTAAATACCCTTGCGATAT 338900
Query 23107 TTGGCAATACAC------TGAAACTGG-TCACACACCG--GGAATTGGTAAATGTGATTT 23157
|||||||||| | ||||| || | || ||| | || || ||||||
Sbjct 338899 TTGGCAATACGCGGACGGGGAAACAGGAGGATGGCTCGATGGAGTCGGGAAGGTTGATTT 338840
Query 23158 GAATCAATTGATTGGTAGTAAAAATCTAGCTTACTTCACTGGTCAAGATGATCAAACACC 23217
||| || || || | |||| | || ||| || | || | || | | | |
Sbjct 338839 AAATTCTTTAATCGGAAATAAACCTTTATCTTGGTTTATAGGAAACGAGCAACCTATTTC 338780
Query 23218 TAA---AGGATATCAATATGTAAGAAGTGGTGGATTTGGTAGTGATTTAATAGGT----G 23270
||| |||||||||||||| | |||||||||||| ||| || ||| |
Sbjct 338779 TAATGGCGGATATCAATATGTTAAGTCTGGTGGATTTGG----CGTTTCATTGGTTCCGG 338724
Query 23271 AAGTTTCAACTAAAATGAATGAACTTGGAACAAAAGGTAGAGTTATTTTAAATCCGAGTG 23330
|||| | || | ||| || | ||| || ||||| |||||||| |||| | |
Sbjct 338723 AAGTATTAAATGCTATGGCCGAGCGTGGTACTAAAGGACAAGTTATTTCTGATCC-ATTA 338665
Query 23331 A-AGGTCTTGCATATATTCAAACTGATGTAATGCCAAATGAAGAATTAGATAAAATAACT 23389
| ||| ||||| | ||||| || || |||| ||| |||||||||||||| |||
Sbjct 338664 ACCGGTACAGCATACTTGCAAACGGAAGTGTTGCCGAATCCTGAATTAGATAAAATTACT 338605
Query 23390 TGGTGGATGGAT 23401
||||||||||||
Sbjct 338604 TGGTGGATGGAT 338593
Score = 109 bits (120), Expect = 9e-20
Identities = 287/432 (66%), Gaps = 22/432 (5%)
Strand=Plus/Minus
Query 22987 GAAAGTTGGATTATATGTTGGTCATCATATGTATGAGCCTTTTGGTATGAGTCAAGTTCA 23046
||||||||| || ||||| |||| || |||||| | | ||| | || | || |
Sbjct 382335 GAAAGTTGGTTTTTATGTAAGTCACCACATGTATAACAAATATGGATTAAGCAATGTGAA 382276
Query 23047 ATCTGACTTTGTATGGATTCCGCGATATGGTGGTAGTAAACCTAAATATCCTTGCGATAT 23106
| |||| || | |||||||| || |||||||| || ||||||||| |||||||||||
Sbjct 382275 AGCTGATTTCCTGTGGATTCCTCGTTATGGTGGACCTAGACCTAAATACCCTTGCGATAT 382216
Query 23107 TTGGCAATACAC------TGAAACTGG-TCACACACCG--GGAATTGGTAAATGTGATTT 23157
|||||||||| | ||||| || | || ||| | || || ||||||
Sbjct 382215 TTGGCAATACGCGGACGGGGAAACAGGAGGATGGCTCGATGGAGTCGGGAAGGTTGATTT 382156
Query 23158 GAATCAATTGATTGGTAGTAAAAATCTAGCTTACTTCACTGGTCAAGATGATCAAACACC 23217
||| || || || | |||| | || ||| || | || | || | | | |
Sbjct 382155 AAATTCTTTAATCGGAAATAAACCTTTATCTTGGTTTATAGGAAACGAGCAACCTATTTC 382096
Query 23218 TAA---AGGATATCAATATGTAAGAAGTGGTGGATTTGGTAGTGATTTAATAGGT----G 23270
||| |||||||||||||| | |||||||||||| ||| || ||| |
Sbjct 382095 TAATGGCGGATATCAATATGTTAAGTCTGGTGGATTTGG----CGTTTCATTGGTTCCGG 382040
Query 23271 AAGTTTCAACTAAAATGAATGAACTTGGAACAAAAGGTAGAGTTATTTTAAATCCGAGTG 23330
|||| | || | ||| || | ||| || ||||| |||||||| |||| | |
Sbjct 382039 AAGTATTAAATGCTATGGCCGAGCGTGGTACTAAAGGACAAGTTATTTCTGATCC-ATTA 381981
Query 23331 A-AGGTCTTGCATATATTCAAACTGATGTAATGCCAAATGAAGAATTAGATAAAATAACT 23389
| ||| ||||| | ||||| || || |||| ||| |||||||||||||| |||
Sbjct 381980 ACCGGTACAGCATACTTGCAAACGGAAGTGTTGCCGAATCCTGAATTAGATAAAATTACT 381921
Query 23390 TGGTGGATGGAT 23401
||||||||||||
Sbjct 381920 TGGTGGATGGAT 381909
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 84693052512096
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