Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_031028.1 Length=45285 Score E Sequences producing significant alignments: (Bits) Value seq1 163 8e-36 >seq1 Length=46747018 Score = 163 bits (180), Expect = 8e-36 Identities = 263/367 (72%), Gaps = 17/367 (5%) Strand=Plus/Minus Query 17556 CGAGCTCGCGACGGTAACCCGTACGGTTACGGCGGAGCCTTCAACCTGAACCCGGACGTC 17615 || ||||||| || ||| |||||| |||||||| || |||| || ||||| | | Sbjct 34902907 CGCGCTCGCGCTGGCAACAGGTACGGCTACGGCGGGGCGTTCACACTCAACCCCCGAGAC 34902848 Query 17616 TCGACCGACTGCTCGGGCCTGGTCCTGCAGTCGGCCGCGTACCTG--ACCAAGGT--GAA 17671 | |||||||||||||| ||||| |||||| |||| | |||| || ||| ||| Sbjct 34902847 ACCACCGACTGCTCGGGTCTGGTTCTGCAGACGGCAG----CCTGGTACGGCGGTCGGAA 34902792 Query 17672 GAACTGGGTAGGAAACCGCTTCGGTTCGACCGAGTCGTTCCGCCTGGACTACCCAGTGGT 17731 | ||||| | |||||||| | ||| ||||| ||| ||||| || ||| || | || Sbjct 34902791 GGACTGGATCGGAAACCGGTACGGCTCGACTGAGAGCTTCCGGCTCGACCACAAGATCGT 34902732 Query 17732 CTACGAACTCGGTTTCAAGCG-CT-TCTCCGGCGACCCCTCGCG--ACTCCCCTTCAAGC 17787 |||||| ||||| |||| ||| || |||||| || | | ||| || |||| | Sbjct 34902731 CTACGACCTCGGGTTCAGGCGACTCCCTCCGG-GAGGCGTTGCGGCCCTGGGATTCACCC 34902673 Query 17788 CGCTCCTGCTGGTCGGCCTGCAGCACGGAGGAGGGGGGATCTACTCCCACACTGCGTGCA 17847 || || |||| ||||| || |||||||| || ||||| ||||| ||||| || |||| Sbjct 34902672 CGGTCATGCTCGTCGGGCTCCAGCACGGCGGCGGGGGCCGGTACTCGCACACCGCTTGCA 34902613 Query 17848 C-CTTCT-ACGGCAAGGACGTACCCGGTGGTCCGGTCAAGGAGTCGGCGCGCGGCGTTGA 17905 | || | ||| | |||| | |||||||| ||||| |||| ||| || ||||| || Sbjct 34902612 CGCTGATGACG--ATGGACATCCCCGGTGGCCCGGTGAAGGTCTCGCAACGAGGCGTCGA 34902555 Query 17906 CTGGGAG 17912 ||||||| Sbjct 34902554 CTGGGAG 34902548 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 144788034124864