Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_031032.1 Length=24320 Score E Sequences producing significant alignments: (Bits) Value seq494 100 4e-17 seq137 95.1 2e-15 seq1 84.2 3e-12 >seq494 Length=34644 Score = 100 bits (110), Expect = 4e-17 Identities = 307/470 (65%), Gaps = 41/470 (9%) Strand=Plus/Minus Query 20801 GAAAGTTGGTTTATATGTAGGTCATCATATGTA---TGAGTCT--TTTGGTATGAGTCAA 20855 |||||| || || ||||||| || |||||||| ||| | | ||| | ||| Sbjct 2308 GAAAGTAGGATTTTATGTAGCACACCATATGTACGGTGACTATAATTTACAA--AGT--- 2254 Query 20856 GTTCAATCTGACTTTGTATGGATTCCACGATATGG---------TGGTAGT--------- 20897 || ||| |||||||| | ||| | |||||||| || ||||||| Sbjct 2253 GTACAAGCTGACTTTATTTGGTTACCACGATACGGAACAAATGATGGTAGTCCACAGAAG 2194 Query 20898 AAACCTAAATATCCTTGTGATATTTGGCAATACACTGAAACTGGTCACACACCGGGAATT 20957 ||||| ||| ||||||| ||||||||||| || || | |||| | | || ||| Sbjct 2193 AAACCATCCTATACTTGTGACATTTGGCAATATACCGATAATGGTTATATTGATGGTATT 2134 Query 20958 GGTAAATGCGATTTGAATCAATTGATTGGTAGTAAAAATCTAGCTTACTTCACTGGTCAA 21017 || ||| ||| | ||| |||| ||| |||| |||| || || || || | Sbjct 2133 GGAAAAGTGGATATTAATTTATTGCAAGGTGACAAAACGCTAGATTGGTTTACCGG---A 2077 Query 21018 GATGATCAAACAC---CTAAAGGA---TATCAATATGTTAGAAGTGGCGGATTGGGTTCT 21071 || | ||| | |||| || ||||||||||||| | ||| || || ||| | Sbjct 2076 GAGAAACAATCTGTTGCTAATGGCGGTTATCAATATGTTAAATCTGGTGGTTTTGGTATT 2017 Query 21072 AGTTTAATTAAGGAAGTTTCAATTAAAATGAATGAACTTGGAATTAAGGGTAGAATTATT 21131 || || | |||| | || | |||||||| | ||||| ||| || | ||||| Sbjct 2016 TCATTGGTTCAAGAAGCTCTAAATGCTATGAATGAGCGTGGAACTAAAGGACAAGTTATT 1957 Query 21132 TTAAATCCAAGTGAA--GGACTTGCCTTTATGCAAACTGATGTATTACCTAATGGAGAAT 21189 | |||||| | || || | || | ||||||| || || ||||| ||||| || Sbjct 1956 TCTAATCCA--TTAACTGGTTTAGCATACTTGCAAACCGAAGTGTTACCAAATGGTGAGC 1899 Query 21190 TAGATAAGATTACATCTTGGTTTGATGAAAAAGGTTGGTGGTATGAGTAT 21239 | |||||||||||| ||||| | || |||| | |||||||| |||||| Sbjct 1898 TTGATAAGATTACAGCTTGGATGGACGAAAGAAACTGGTGGTACGAGTAT 1849 >seq137 Length=409738 Score = 95.1 bits (104), Expect = 2e-15 Identities = 99/130 (76%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 20801 GAAAGTTGGTTTATATGTAGGTCATCATATGTATGAGTCTTTTGGTATGAGTCAAGTTCA 20860 |||||||||||| |||||| |||| || |||||| | | ||| | || | || | Sbjct 39454 GAAAGTTGGTTTTTATGTAAGTCACCACATGTATAACAAATATGGATTAAGCAATGTGAA 39395 Query 20861 ATCTGACTTTGTATGGATTCCACGATATGGTGGTAGTAAACCTAAATATCCTTGTGATAT 20920 | |||| || | |||||||| || |||||||| || ||||||||| ||||| ||||| Sbjct 39394 AGCTGATTTCCTGTGGATTCCTCGTTATGGTGGACCTAGACCTAAATACCCTTGCGATAT 39335 Query 20921 TTGGCAATAC 20930 |||||||||| Sbjct 39334 TTGGCAATAC 39325 Score = 95.1 bits (104), Expect = 2e-15 Identities = 99/130 (76%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 20801 GAAAGTTGGTTTATATGTAGGTCATCATATGTATGAGTCTTTTGGTATGAGTCAAGTTCA 20860 |||||||||||| |||||| |||| || |||||| | | ||| | || | || | Sbjct 82175 GAAAGTTGGTTTTTATGTAAGTCACCACATGTATAACAAATATGGATTAAGCAATGTGAA 82116 Query 20861 ATCTGACTTTGTATGGATTCCACGATATGGTGGTAGTAAACCTAAATATCCTTGTGATAT 20920 | |||| || | |||||||| || |||||||| || ||||||||| ||||| ||||| Sbjct 82115 AGCTGATTTCCTGTGGATTCCTCGTTATGGTGGACCTAGACCTAAATACCCTTGCGATAT 82056 Query 20921 TTGGCAATAC 20930 |||||||||| Sbjct 82055 TTGGCAATAC 82046 Score = 95.1 bits (104), Expect = 2e-15 Identities = 99/130 (76%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 20801 GAAAGTTGGTTTATATGTAGGTCATCATATGTATGAGTCTTTTGGTATGAGTCAAGTTCA 20860 |||||||||||| |||||| |||| || |||||| | | ||| | || | || | Sbjct 124896 GAAAGTTGGTTTTTATGTAAGTCACCACATGTATAACAAATATGGATTAAGCAATGTGAA 124837 Query 20861 ATCTGACTTTGTATGGATTCCACGATATGGTGGTAGTAAACCTAAATATCCTTGTGATAT 20920 | |||| || | |||||||| || |||||||| || ||||||||| ||||| ||||| Sbjct 124836 AGCTGATTTCCTGTGGATTCCTCGTTATGGTGGACCTAGACCTAAATACCCTTGCGATAT 124777 Query 20921 TTGGCAATAC 20930 |||||||||| Sbjct 124776 TTGGCAATAC 124767 Score = 95.1 bits (104), Expect = 2e-15 Identities = 99/130 (76%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 20801 GAAAGTTGGTTTATATGTAGGTCATCATATGTATGAGTCTTTTGGTATGAGTCAAGTTCA 20860 |||||||||||| |||||| |||| || |||||| | | ||| | || | || | Sbjct 167985 GAAAGTTGGTTTTTATGTAAGTCACCACATGTATAACAAATATGGATTAAGCAATGTGAA 167926 Query 20861 ATCTGACTTTGTATGGATTCCACGATATGGTGGTAGTAAACCTAAATATCCTTGTGATAT 20920 | |||| || | |||||||| || |||||||| || ||||||||| ||||| ||||| Sbjct 167925 AGCTGATTTCCTGTGGATTCCTCGTTATGGTGGACCTAGACCTAAATACCCTTGCGATAT 167866 Query 20921 TTGGCAATAC 20930 |||||||||| Sbjct 167865 TTGGCAATAC 167856 Score = 95.1 bits (104), Expect = 2e-15 Identities = 99/130 (76%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 20801 GAAAGTTGGTTTATATGTAGGTCATCATATGTATGAGTCTTTTGGTATGAGTCAAGTTCA 20860 |||||||||||| |||||| |||| || |||||| | | ||| | || | || | Sbjct 339019 GAAAGTTGGTTTTTATGTAAGTCACCACATGTATAACAAATATGGATTAAGCAATGTGAA 338960 Query 20861 ATCTGACTTTGTATGGATTCCACGATATGGTGGTAGTAAACCTAAATATCCTTGTGATAT 20920 | |||| || | |||||||| || |||||||| || ||||||||| ||||| ||||| Sbjct 338959 AGCTGATTTCCTGTGGATTCCTCGTTATGGTGGACCTAGACCTAAATACCCTTGCGATAT 338900 Query 20921 TTGGCAATAC 20930 |||||||||| Sbjct 338899 TTGGCAATAC 338890 Score = 95.1 bits (104), Expect = 2e-15 Identities = 99/130 (76%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 20801 GAAAGTTGGTTTATATGTAGGTCATCATATGTATGAGTCTTTTGGTATGAGTCAAGTTCA 20860 |||||||||||| |||||| |||| || |||||| | | ||| | || | || | Sbjct 382335 GAAAGTTGGTTTTTATGTAAGTCACCACATGTATAACAAATATGGATTAAGCAATGTGAA 382276 Query 20861 ATCTGACTTTGTATGGATTCCACGATATGGTGGTAGTAAACCTAAATATCCTTGTGATAT 20920 | |||| || | |||||||| || |||||||| || ||||||||| ||||| ||||| Sbjct 382275 AGCTGATTTCCTGTGGATTCCTCGTTATGGTGGACCTAGACCTAAATACCCTTGCGATAT 382216 Query 20921 TTGGCAATAC 20930 |||||||||| Sbjct 382215 TTGGCAATAC 382206 >seq1 Length=46747018 Score = 84.2 bits (92), Expect = 3e-12 Identities = 121/171 (71%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 19924 TTGGTTCTAGAGGTAAAAAACATACTCTTGAATTATCTATGGAATATTCAAGAACAGTTG 19983 ||||| ||||| | || || | ||||| || || ||||| ||| |||| || | Sbjct 10939344 TTGGTAAAAGAGGGGGAGAATATTCCCTTGAGGTAGCTGAAGAATACTCACGAACTGTAG 10939403 Query 19984 TTGCACCTAGTTTAGGTAATACAACGGGTAGAACTACACCTTACGTTAACGAAGTTTCAG 20043 | || || |||||||| ||||| || || | |||||||||||||| |||||| || | Sbjct 10939404 TAGCCCCAAGTTTAGGAAATACTACTGGGATTACTACACCTTACGTCAACGAAACATCGG 10939463 Query 20044 TTGCTTTGGGTGTTCCTTGGAGATATGTAAACGGGGGAAACTTTCATTATG 20094 || | ||| || | |||||||| | || |||||||| ||||||| Sbjct 10939464 TTCGAGTAGGTAAACCCTATAGATATGTTGATGGAGGAAACTTCCATTATG 10939514 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 77704363703904