Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq2 109 8e-19 seq13 95.1 2e-14 seq8 91.5 2e-13 >seq2 Length=31488241 Score = 109 bits (120), Expect = 8e-19 Identities = 376/581 (65%), Gaps = 9/581 (2%) Strand=Plus/Minus Query 46630 CATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGC 46689 || || || || || ||||||||||| || | || | ||||| || || |||||| Sbjct 27066461 CACGCGAAGTCGCAGTGAAGGCCTTCGTCCCGCGAGATCAGCTCGTTGGAGAAGGTGAGC 27066402 Query 46690 CCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAAT 46749 || ||||| || || ||||| |||||||| || || | ||| ||| || ||||| Sbjct 27066401 CCCGGCATGAGCCCTCGCTTCTTGAGCCAGAAGATGGAGCAGAAGCTTCCGGAGAAGAAG 27066342 Query 46750 ATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAA--CTGGCATCATTATGAA 46807 || ||||| || |||||| || || | ||||| || || ||| ||| || | Sbjct 27066341 ATCCCTTCCACGCACGCGAAGGCCACGATCCTCTCGGCGAAAGTCTGAGATC--CATCGA 27066284 Query 46808 TCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAA 46867 ||||| | |||||| | ||||| ||| || ||||| || || || || || | Sbjct 27066283 TCCACTTCAAAGCCCATTGGGCCTTCTTCGCGACGCAAGGGATGGTCTCAATCGCGCGGA 27066224 Query 46868 AGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATTT 46927 ||||| || | || | | || || | || ||||||| || || || ||||| | Sbjct 27066223 AGAGATGGTCCCTCTCCTTGTTGTCCTTGATGTACGTATCTAGCAAGAGGCTGTACATCT 27066164 Query 46928 CTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCT 46987 | || || || || ||||| || ||||| || ||||| || | || || | | || Sbjct 27066163 CCGAGTGGATATTCTCAATCGCGATCTGGAACCCGTAGAAGGCACGCGCCTCGGAGACCT 27066104 Query 46988 GTACCTCTGTACA-AAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCAGCA 47046 | || || | ||| || || | | |||||| || ||||| || || || Sbjct 27066103 GCACGTC-GGACATGAACCGGGAGGCGAGATTCTCGAGGACGATTCCGTCGGAGGCGGCG 27066045 Query 47047 AAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTATT---CCAG 47103 || || || | || ||||| || || | || || | || || || |||| Sbjct 27066044 AAGAAGGCGAGGACGTGTTTGATGAAGTGGCGCTCGCCGTCGTTGAGGTTGTTCTCCCAG 27065985 Query 47104 TCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTT 47163 || | | |||| || | || ||||| || || |||||||| || || || ||||| Sbjct 27065984 TCGCGGGTGTCTTGGGAGAGGTCGACTTCCTCGGCGGTCCAGAAGGAGGCTTCGGCTTTC 27065925 Query 47164 TTATACATATTCCATATATCACGATATTGGATCGGAAAAAT 47204 || ||||| | ||| || | | || |||||||| || || Sbjct 27065924 TTGTACATCTCCCAGATCTGCGGGTAGTGGATCGGGAACAT 27065884 Score = 107 bits (118), Expect = 3e-18 Identities = 229/340 (67%), Gaps = 4/340 (1%) Strand=Plus/Plus Query 46630 CATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGC 46689 || || || || || ||||||||||| || | || | ||||| || || |||||| Sbjct 7376975 CACGCGAAGTCGCAGTGAAGGCCTTCGTCCCGCGAGATCAGCTCGTTGGAGAAGGTGAGC 7377034 Query 46690 CCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAAT 46749 || ||||| || || ||||| |||||||| || || | ||| ||| || ||||| Sbjct 7377035 CCCGGCATGAGCCCTCGCTTCTTGAGCCAGAAGATGGAGCAGAAGCTTCCGGAGAAGAAG 7377094 Query 46750 ATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAA--CTGGCATCATTATGAA 46807 || ||||| || |||||| || || | ||||| || || ||| ||| || | Sbjct 7377095 ATCCCTTCCACGCACGCGAAGGCCACGATCCTCTCGGCGAAAGTCTGAGATC--CATCGA 7377152 Query 46808 TCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAA 46867 ||||| | |||||| | ||||| ||| || ||||| || || || || || | Sbjct 7377153 TCCACTTCAAAGCCCATTGGGCCTTCTTCGCGACGCAAGGGATGGTCTCAATCGCGCGGA 7377212 Query 46868 AGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATTT 46927 ||||| || | || | | || || | || ||||||| || || || ||||| | Sbjct 7377213 AGAGATGGTCCCTCTCCTTGTTGTCCTTGATGTACGTATCTAGCAAGAGGCTGTACATCT 7377272 Query 46928 CTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAA 46967 | || || || || ||||| || ||||| || ||||| || Sbjct 7377273 CCGAGTGGATATTCTCAATCGCGATCTGGAACCCGTAGAA 7377312 >seq13 Length=54295181 Score = 95.1 bits (104), Expect = 2e-14 Identities = 377/583 (65%), Gaps = 13/583 (2%) Strand=Plus/Plus Query 46630 CATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGC 46689 || || || || || ||||||||||| |||| || | ||||| || || || ||| Sbjct 40048143 CACGCGAAGTCGCAGTGAAGGCCTTCGTCTCGCGAGATCAGCTCGTTGGAGAAGGTAAGC 40048202 Query 46690 CCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGAT-CCAGAAAAGAA 46748 || ||||| || || ||||| |||||||| || || | || ||| | || || ||||| Sbjct 40048203 CCCGGCATGAGCCCTCGCTTCTTGAGCCAGAAGATCG-AGCAGAAGCTACCGGAGAAGAA 40048261 Query 46749 TATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAA--CTGGCATCATTATGA 46806 || ||||| || ||||| || || | ||||| || || ||| ||| | Sbjct 40048262 GATCCCTTCCACGCAAGCGAACGCCACGATCCTCTCGGCGAAAGTCTGAGATC--CGTCG 40048319 Query 46807 ATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTA 46866 |||||| | ||||| | ||||| ||| || ||||| || ||||| || || Sbjct 40048320 ATCCACTTCATGGCCCATTGGGCCTTCTTCACGACGCAAGGGATGGTTTCAATCGCGCGG 40048379 Query 46867 AAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATT 46926 |||||| || | || | | || || | || ||||||| || || || ||||| Sbjct 40048380 AAGAGATGGTCCCTCTCCTTGTTGTCCTTGATGTACGTATCTAACAAGAGGCTGTACATC 40048439 Query 46927 TCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATC 46986 || || || || || || || || ||||| || ||||| || | || || | | | Sbjct 40048440 TCCGAGTGGATATTCTCGATCGCGATCTGGAACCCGTAGAAGGCGCGCGCCTCGGAGACC 40048499 Query 46987 TGTACCTCTGTACA-AAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCAGC 47045 || || || | ||| || || | | |||||| || ||||| || || || Sbjct 40048500 TGCACGTC-GGACATGAACCGGGTGGCGAGATTCTCGAGGACGATTCCGTCGGAGGCGGC 40048558 Query 47046 AAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAG-TCAGTTTATT---CC 47101 || || || | || ||||| || || | || || || | | || || || || Sbjct 40048559 GAAGAAGGCGAGGACGTGTTTGATGAAGTGGCGCTC-TCCGTCGTTGAGGTTGTTCTCCC 40048617 Query 47102 AGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTT 47161 |||| | | |||| || | || ||||| || || |||||||| || || || |||| Sbjct 40048618 AGTCGCGGGTGTCTTGGGAGAGGTCGACTTCCTCGGCGGTCCAGAAGGAGGCTTCGGCTT 40048677 Query 47162 TTTTATACATATTCCATATATCACGATATTGGATCGGAAAAAT 47204 | || ||||| | ||| || | | || ||||| || || || Sbjct 40048678 TCTTGTACATCTCCCAGATCTGCGGGTAGTGGATTGGGAACAT 40048720 >seq8 Length=24646021 Score = 91.5 bits (100), Expect = 2e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 76993 AGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATT 77052 |||||||| ||| || | || ||||| |||||||| |||||| | | ||| | || || Sbjct 14311192 AGTTCCTGAATTGAAGAGAGTCGGAGACGCATGAGTAAACCATCTCTGAGACATTAAATG 14311133 Query 77053 GTATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAA 77112 ||| |||| || | | || ||||| || ||||| || |||| || | ||| | Sbjct 14311132 GTAAGTTTTGATTGCGGAATCAATATCTTCTTTGTGAATGCCAACAGAAACCCTCATGAG 14311073 Query 77113 CATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAA 77172 |||||||||||||| || || || || | ||| || | ||||||| | || | Sbjct 14311072 CATATGCTGAGGTCTCTCAACCACTTTCCCATGGACTTTTAAGAGGTATGATCTCTCAAG 14311013 Query 77173 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 77220 ||||| || ||||| |||| ||| ||| || | || ||||| || Sbjct 14311012 TGTTTTGAACCCAAAGTAGTCGTACTCAAAATCACGATCATAAATGAT 14310965 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712922137528320