Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_031041.1 Length=52501 Score E Sequences producing significant alignments: (Bits) Value seq18 159 1e-34 seq9 159 1e-34 >seq18 Length=36757632 Score = 159 bits (176), Expect = 1e-34 Identities = 399/600 (67%), Gaps = 26/600 (4%) Strand=Plus/Plus Query 45158 TCCCGCGTCCAGTCCGTCAGGTCGTACGGATACGTCGGCTTA---------CCGGTCTTC 45208 || |||||||| | |||||||||||| || | |||||||| || ||||| Sbjct 22718134 TCACGCGTCCACTTCGTCAGGTCGTAGGGCTTGGTCGGCTTCGGTGCCTTGCCCTTCTTC 22718193 Query 45209 GCCA---TGAAGTACACGCCGCGCTT--GATC-TCGACTCCGTACAGCTGTTTCAACGCC 45262 ||| ||||||| ||||| ||| || | ||||| ||||| | | ||| Sbjct 22718194 CCCACCATGAAGTAGTCGCCGGTCTTCGGAGCCTCGACACCGTAGGTCATCGCGACCGCG 22718253 Query 45263 AGCGCGTACACCGCGAGCTGAAAGTCATCTCCGGGCTTGAGCCCGGACTTCCAGTCGACC 45322 ||||||||||| ||||||| ||||| || || || | | ||||| ||| |||| Sbjct 22718254 AGCGCGTACACGCCGAGCTGGAAGTCGTCACCCGGTTGGTTCCCGGTCTTGTAGTCCCGG 22718313 Query 45323 ACCATCACCTCACCGTCGAGCACGAGCACCGCGTCGATGTAGCCCCGGATCTCTATCCCA 45382 || | ||| ||||||| ||||| || ||||||||||| || || | | ||||| Sbjct 22718314 ACTCGAAGCTCCCCGTCGACCACGACGACGGCGTCGATGTATCCGCGAACCAGGATCCCG 22718373 Query 45383 TCGAGCTCGAACTCGATCGCGAGCTCTATCCCCGGGGTGCCGTCCGGTGTGTGCCACACC 45442 |||||||||| ||||| ||||| ||| | || || |||||||| || ||| | | Sbjct 22718374 TCGAGCTCGATCTCGAAGTACAGCTCGATCGCTGGCGTACCGTCCGGGGTCACCCAGATC 22718433 Query 45443 TCTAGGCTCGGGTGGTTGTCGATCCAGTCGATCACCTTATCGACCTGTTCGAGTCCGATA 45502 || ||| || | | || ||| ||| | ||| |||||||| || || |||| Sbjct 22718434 TCCTGGCCCG---GAGTCTCCCGCCACGCGAAGAACTTCTCGACCTGCTCCAGGCCGACG 22718490 Query 45503 CCCCAGCGACGTTCGATGTCGTCCGCGCCGCGGTACGGCCCGGAGGCGAACCACCACCCC 45562 | || || |||||||| | ||| |||||| || || ||||||| | Sbjct 22718491 GTGTACCGGCGCTCGATGTCTCGCTGACCGTTGTACGGACCAGACCACGTCCACCACTCG 22718550 Query 45563 AGGTTCGGGGTCTCCTCGGT--AGCTTCGTTGATCCCGTCGGCGTACTCGGCC--TTGAA 45618 | |||||||||||||||||| || || | ||| |||||| | ||| ||| Sbjct 22718551 AAGTTCGGGGTCTCCTCGGTGAAGGCTC--CAACGTCGTTGGCGTAGT--GCCAACGGAA 22718606 Query 45619 GATCTCATAGCACTCTTCGCGCGTCAGCGGTGAGCCGGCGAGCTTCGAGAGCATGTATTT 45678 || || | | ||| || |||||||||| |||| | || | | | | | Sbjct 22718607 CATGTCCTTGGCCTCGTCAAGCGTCAGCGGCATGCCGTAGGACTCCCATACCTCGACCGC 22718666 Query 45679 CTCAGCCACCGCGTGGACCCCGGTACCCTGCTGCAGCCAGGCCGCTGGGCGTCTCCACAC 45738 |||||| || ||||||| | | || |||||| |||||||||||||||| || |||||| Sbjct 22718667 CTCAGCGACAGCGTGGAACGCAGTCCCCTGCGGCAGCCAGGCCGCTGGCCGCTGCCACAC 22718726 >seq9 Length=46179939 Score = 159 bits (176), Expect = 1e-34 Identities = 399/600 (67%), Gaps = 26/600 (4%) Strand=Plus/Minus Query 45158 TCCCGCGTCCAGTCCGTCAGGTCGTACGGATACGTCGGCTTA---------CCGGTCTTC 45208 || |||||||| | |||||||||||| || | |||||||| || ||||| Sbjct 16532210 TCACGCGTCCACTTCGTCAGGTCGTAGGGCTTGGTCGGCTTCGGTGCCTTGCCCTTCTTC 16532151 Query 45209 GCCA---TGAAGTACACGCCGCGCTT--GATC-TCGACTCCGTACAGCTGTTTCAACGCC 45262 ||| ||||||| ||||| ||| || | ||||| ||||| | | ||| Sbjct 16532150 CCCACCATGAAGTAGTCGCCGGTCTTCGGAGCCTCGACACCGTAGGTCATCGCGACCGCG 16532091 Query 45263 AGCGCGTACACCGCGAGCTGAAAGTCATCTCCGGGCTTGAGCCCGGACTTCCAGTCGACC 45322 ||||||||||| ||||||| ||||| || || || | | ||||| ||| |||| Sbjct 16532090 AGCGCGTACACGCCGAGCTGGAAGTCGTCACCCGGTTGGTTCCCGGTCTTGTAGTCCCGG 16532031 Query 45323 ACCATCACCTCACCGTCGAGCACGAGCACCGCGTCGATGTAGCCCCGGATCTCTATCCCA 45382 || | ||| ||||||| ||||| || ||||||||||| || || | | ||||| Sbjct 16532030 ACTCGAAGCTCCCCGTCGACCACGACGACGGCGTCGATGTATCCGCGAACCAGGATCCCG 16531971 Query 45383 TCGAGCTCGAACTCGATCGCGAGCTCTATCCCCGGGGTGCCGTCCGGTGTGTGCCACACC 45442 |||||||||| ||||| ||||| ||| | || || |||||||| || ||| | | Sbjct 16531970 TCGAGCTCGATCTCGAAGTACAGCTCGATCGCTGGCGTACCGTCCGGGGTCACCCAGATC 16531911 Query 45443 TCTAGGCTCGGGTGGTTGTCGATCCAGTCGATCACCTTATCGACCTGTTCGAGTCCGATA 45502 || ||| || | | || ||| ||| | ||| |||||||| || || |||| Sbjct 16531910 TCCTGGCCCG---GAGTCTCCCGCCACGCGAAGAACTTCTCGACCTGCTCCAGGCCGACG 16531854 Query 45503 CCCCAGCGACGTTCGATGTCGTCCGCGCCGCGGTACGGCCCGGAGGCGAACCACCACCCC 45562 | || || |||||||| | ||| |||||| || || ||||||| | Sbjct 16531853 GTGTACCGGCGCTCGATGTCTCGCTGACCGTTGTACGGACCAGACCACGTCCACCACTCG 16531794 Query 45563 AGGTTCGGGGTCTCCTCGGT--AGCTTCGTTGATCCCGTCGGCGTACTCGGCC--TTGAA 45618 | |||||||||||||||||| || || | ||| |||||| | ||| ||| Sbjct 16531793 AAGTTCGGGGTCTCCTCGGTGAAGGCTC--CAACGTCGTTGGCGTAGT--GCCAACGGAA 16531738 Query 45619 GATCTCATAGCACTCTTCGCGCGTCAGCGGTGAGCCGGCGAGCTTCGAGAGCATGTATTT 45678 || || | | ||| || |||||||||| |||| | || | | | | | Sbjct 16531737 CATGTCCTTGGCCTCGTCAAGCGTCAGCGGCATGCCGTAGGACTCCCATACCTCGACCGC 16531678 Query 45679 CTCAGCCACCGCGTGGACCCCGGTACCCTGCTGCAGCCAGGCCGCTGGGCGTCTCCACAC 45738 |||||| || ||||||| | | || |||||| |||||||||||||||| || |||||| Sbjct 16531677 CTCAGCGACAGCGTGGAACGCAGTCCCCTGCGGCAGCCAGGCCGCTGGCCGCTGCCACAC 16531618 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 167878856814656