Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_031047.1 Length=170770 Score E Sequences producing significant alignments: (Bits) Value seq82 199 4e-46 >seq82 Length=657493 Score = 199 bits (220), Expect = 4e-46 Identities = 315/450 (70%), Gaps = 6/450 (1%) Strand=Plus/Minus Query 151964 CGTTTTTATGAAGCAGTATCTACTCGACAGATTTCATTGCCAACTCCTATTATGGCTGGT 152023 ||||||||| | || | || ||| | ||||| || || || || |||||| |||| Sbjct 461266 CGTTTTTATAATGCCATTTCAACTTTCAAAATTTCTTTACCGACACCAATTATGTCTGGA 461207 Query 152024 TGTCGTACTCCTACTCGACAGTTCAGTTCATGCGTTGTTATTGAGGCAGGAGATTCGCTG 152083 | | |||||||||||||| || || ||||| ||| | ||||| | ||| || Sbjct 461206 GTTAGAACTCCTACTCGACAATTTAGCTCATGTGTTTTAATTGAATGTGATGATAATCTA 461147 Query 152084 AAGTCTATCAATAAGGCTTCTGCT---TCAATTGTTGAATATATCTCCAAACGAGCTGGA 152140 | ||||| ||| ||| || || || ||||| ||||| | || ||||||| ||| Sbjct 461146 GATTCTAT---TAACGCTACTACTAGTTCTATTGTAAAATATGTTTCTCAACGAGCAGGA 461090 Query 152141 ATCGGCATTAACGTTGGTATGATTCGTGCCGAAGGTTCTAAGATTGGCATGGGTGAAGTA 152200 || || ||||| | ||| | |||||||| | |||| | ||| | | || |||| | Sbjct 461089 ATTGGTATTAATGCTGGAAAAATTCGTGCAGTAGGTAGTCCTATTAGAAATGGCGAAGCA 461030 Query 152201 CGCCATACTGGTGTTATTCCTTTTTGGAAACATTTTCAGACTGCTGTTAAATCATGCTCA 152260 ||||||||| ||||||||||| ||||||||||| | |||||| ||||| || || Sbjct 461029 TTTCATACTGGTTGTATTCCTTTTTATAAACATTTTCAAAGTGCTGTAAAATCCTGTTCT 460970 Query 152261 CAGGGTGGAATTCGTGGCGGCGCTGCTACTGCTTATTATCCTATTTGGCATTTGGAAGTT 152320 || || ||| || | || || || || ||| | |||||| || |||||||| ||| || Sbjct 460969 CAAGGAGGAGTTAGAGGTGGAGCGGCAACTATATTTTATCCAATATGGCATTTTGAAATT 460910 Query 152321 GAAAATCTTCTCGTTTTGAAAAATAACAAAGGCGTAGAAGAAAACCGCATCCGTCATATG 152380 |||| | | | ||||| |||||||| | ||| | |||||||| | | ||||| | Sbjct 460909 GAAAGTTTATTAGTTTTAAAAAATAATAGGGGCATTGAAGAAAATAGAGTACGTCACGTT 460850 Query 152381 GATTATAGTGTTCAGCTGAATGATTTGATG 152410 |||||| || || | ||| | |||||| Sbjct 460849 GATTATGCAGTACAAATTAATAAATTGATG 460820 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546326603020800