Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_031064.1 Length=36202 Score E Sequences producing significant alignments: (Bits) Value seq341 199 9e-47 >seq341 Length=107858 Score = 199 bits (220), Expect = 9e-47 Identities = 321/459 (70%), Gaps = 7/459 (2%) Strand=Plus/Plus Query 19458 TAGAAAATGTAAAAGTTACTCATGTTTCGTATGTTGACAAAGCAGCAAATAAAAAGCAAT 19517 || |||||| ||| | || |||||||| ||||| || || ||||| |||||||| || | Sbjct 25771 TAAAAAATGCGAAAATAACGCATGTTTCTTATGTAGATAAGGCAGCGAATAAAAAACAGT 25830 Query 19518 TCTTTTTGACTAAATCTGCTAGTGAG---CCAACTTTTGAAACGACAGTAAAACTTTTAA 19574 | || || |||||||| || | | || || || ||| | |||| | || ||| Sbjct 25831 TTTTCTTAACTAAATCGGCGGATAAAAGACCTACATTCCAAAAGCAAGTAGACATTATAA 25890 Query 19575 C--AAAGTCAGATGACCCTCAAAAGCTAGTTTATGGAGTTGTTTATGAGCCTGATGTAGA 19632 | ||||| || ||| || ||| |||||||||| || || ||||| |||| ||| | Sbjct 25891 CGAAAAGT--GAAGACGAACAGAAGTTAGTTTATGGCGTCGTATATGAACCTGGTGTTGC 25948 Query 19633 AGATGCACACGGCGATTTTATGGACGCTGAAACGATTGAAAAAGCAGCACATGGATTCAT 19692 |||||| || ||||| ||| || ||| || |||||||| || |||| ||| || Sbjct 25949 AGATGCTCATAATGATTTCATGACTGCAGAAGAAATCGAAAAAGCTGCTCATGAATTTAT 26008 Query 19693 GGAAGAATATCAAAACATTGATAAGCAACATGATTTTAAAACGAGTGCTGGAAAAGTTGT 19752 | |||| |||||| ||||||| || ||||||||| | | | || || || | || Sbjct 26009 GAAAGAGGCTCAAAATATTGATACTCAGCATGATTTTGCAGCAGGAGCAGGTGAAATAGT 26068 Query 19753 TGAAAGTTATGTCGCTCCAAGTGATATGACGGTAGGTGATACTGCTATTGCTAAAGGAAC 19812 ||||||||| | ||||| |||| | | | ||| ||||| |||||| | Sbjct 26069 GGAAAGTTATATTGCTCCGGATGATTTAGAAATCAACGGTACCACTATTCAAAAAGGATC 26128 Query 19813 TTGGGTTCTTGTAACGAAAGCTACAGATGAACTTTGGGAGTCAATCCAAAAGGGAGAATT 19872 ||||||| ||| || || |||| |||||| | |||||| ||||||||| || ||| | Sbjct 26129 TTGGGTTATTGCTACTAAGGCTAGTGATGAAGTATGGGAGAAAATCCAAAAAGGTGAAAT 26188 Query 19873 TACAGGATACTCTCTTGCTGGAACAGCTGAGGTCGAAGA 19911 || || || | | || ||||||||||| || ||||| Sbjct 26189 CACCGGTTATAGTATGGCCGGAACAGCTGAAGTGGAAGA 26227 Score = 199 bits (220), Expect = 9e-47 Identities = 321/459 (70%), Gaps = 7/459 (2%) Strand=Plus/Plus Query 19458 TAGAAAATGTAAAAGTTACTCATGTTTCGTATGTTGACAAAGCAGCAAATAAAAAGCAAT 19517 || |||||| ||| | || |||||||| ||||| || || ||||| |||||||| || | Sbjct 76339 TAAAAAATGCGAAAATAACGCATGTTTCTTATGTAGATAAGGCAGCGAATAAAAAACAGT 76398 Query 19518 TCTTTTTGACTAAATCTGCTAGTGAG---CCAACTTTTGAAACGACAGTAAAACTTTTAA 19574 | || || |||||||| || | | || || || ||| | |||| | || ||| Sbjct 76399 TTTTCTTAACTAAATCGGCGGATAAAAGACCTACATTCCAAAAGCAAGTAGACATTATAA 76458 Query 19575 C--AAAGTCAGATGACCCTCAAAAGCTAGTTTATGGAGTTGTTTATGAGCCTGATGTAGA 19632 | ||||| || ||| || ||| |||||||||| || || ||||| |||| ||| | Sbjct 76459 CGAAAAGT--GAAGACGAACAGAAGTTAGTTTATGGCGTCGTATATGAACCTGGTGTTGC 76516 Query 19633 AGATGCACACGGCGATTTTATGGACGCTGAAACGATTGAAAAAGCAGCACATGGATTCAT 19692 |||||| || ||||| ||| || ||| || |||||||| || |||| ||| || Sbjct 76517 AGATGCTCATAATGATTTCATGACTGCAGAAGAAATCGAAAAAGCTGCTCATGAATTTAT 76576 Query 19693 GGAAGAATATCAAAACATTGATAAGCAACATGATTTTAAAACGAGTGCTGGAAAAGTTGT 19752 | |||| |||||| ||||||| || ||||||||| | | | || || || | || Sbjct 76577 GAAAGAGGCTCAAAATATTGATACTCAGCATGATTTTGCAGCAGGAGCAGGTGAAATAGT 76636 Query 19753 TGAAAGTTATGTCGCTCCAAGTGATATGACGGTAGGTGATACTGCTATTGCTAAAGGAAC 19812 ||||||||| | ||||| |||| | | | ||| ||||| |||||| | Sbjct 76637 GGAAAGTTATATTGCTCCGGATGATTTAGAAATCAACGGTACCACTATTCAAAAAGGATC 76696 Query 19813 TTGGGTTCTTGTAACGAAAGCTACAGATGAACTTTGGGAGTCAATCCAAAAGGGAGAATT 19872 ||||||| ||| || || |||| |||||| | |||||| ||||||||| || ||| | Sbjct 76697 TTGGGTTATTGCTACTAAGGCTAGTGATGAAGTATGGGAGAAAATCCAAAAAGGTGAAAT 76756 Query 19873 TACAGGATACTCTCTTGCTGGAACAGCTGAGGTCGAAGA 19911 || || || | | || ||||||||||| || ||||| Sbjct 76757 CACCGGTTATAGTATGGCCGGAACAGCTGAAGTGGAAGA 76795 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 115722909056768