Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_031065.1 Length=159878 Score E Sequences producing significant alignments: (Bits) Value seq82 194 2e-44 >seq82 Length=657493 Score = 194 bits (214), Expect = 2e-44 Identities = 311/447 (70%), Gaps = 0/447 (0%) Strand=Plus/Plus Query 132573 CATCAAATCATTGATTTGCAGACCATAATCTAGATGACGAATACGGTTTTCATCTACACC 132632 |||||| | ||| ||||| | ||||||| | ||||| | | ||||| || | || Sbjct 460820 CATCAATTTATTAATTTGTACTGCATAATCAACGTGACGTACTCTATTTTCTTCAATGCC 460879 Query 132633 TTTGTTGTTCTTTAATACAAGCAGGTTTTCAACTTCTAGATGCCACATTGGATAATAAAG 132692 | || || ||||| || | | |||||| ||| | |||||| ||||||||| | | Sbjct 460880 CCTATTATTTTTTAAAACTAATAAACTTTCAATTTCAAAATGCCATATTGGATAAAATAT 460939 Query 132693 AGTAGCTGCACCACCACGTACACCGCCTTGAGAACAAGATTTTACTGCAGTCTGAAAATG 132752 ||| || || ||||| | || || ||||||||||| |||||||| ||| | |||||||| Sbjct 460940 AGTTGCCGCTCCACCTCTAACTCCTCCTTGAGAACAGGATTTTACAGCACTTTGAAAATG 460999 Query 132753 TTTCCAAAAAGGAATTACGCCAGTATGTTTTACTTCGCCATTACCAATTTTTGAGCCTTC 132812 ||| |||||||||| |||||||| | |||||||||| | ||| ||| | Sbjct 461000 TTTATAAAAAGGAATACAACCAGTATGAAATGCTTCGCCATTTCTAATAGGACTACCTAC 461059 Query 132813 AGCTCGAATCATACCGGCGTTGATGCCTATACCAGCTCGCTTGCTGATATACTTAATAAT 132872 || ||||| | || || || || || || || ||||| | | ||| || | ||| Sbjct 461060 TGCACGAATTTTTCCAGCATTAATACCAATTCCTGCTCGTTGAGAAACATATTTTACAAT 461119 Query 132873 ACTGTTACTTGCCGCATTAATAGAATTCAGTGAATCGCCAGCTTCGATAACTACACAAGA 132932 | || | | || |||||||||| || ||| || ||| || | ||||| || Sbjct 461120 AGAACTAGTAGTAGCGTTAATAGAATCTAGATTATCATCACATTCAATTAAAACACATGA 461179 Query 132933 ACTAAATTGACGAGTAGGAGTACGAGCCCCCGCCATAATTGGTGTAGGTAATGAAATCTG 132992 |||||||| ||||||||||| | | | || | |||||||||||| ||||| ||||| | Sbjct 461180 GCTAAATTGTCGAGTAGGAGTTCTAACTCCAGACATAATTGGTGTCGGTAAAGAAATTTT 461239 Query 132993 TCGAGTAGATACAGCATCATAAAAGCG 133019 ||| || | |||| |||||| || Sbjct 461240 GAAAGTTGAAATGGCATTATAAAAACG 461266 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511472802516480