Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_031067.1 Length=52496 Score E Sequences producing significant alignments: (Bits) Value seq18 141 3e-29 seq9 141 3e-29 seq8 125 2e-24 >seq18 Length=36757632 Score = 141 bits (156), Expect = 3e-29 Identities = 395/600 (66%), Gaps = 26/600 (4%) Strand=Plus/Plus Query 45213 TCCCGCGTCCAGTCCGTCAGGTCGTACGGATACGTCGGCTTA---------CCGGTCTTC 45263 || |||||||| | |||||||||||| || | |||||||| || ||||| Sbjct 22718134 TCACGCGTCCACTTCGTCAGGTCGTAGGGCTTGGTCGGCTTCGGTGCCTTGCCCTTCTTC 22718193 Query 45264 GCCA---TGAAGTACACACCGCGCTT--GATC-TCGACTCCGTACAGCTGTTTCAACGCC 45317 ||| ||||||| | ||| ||| || | ||||| ||||| | | ||| Sbjct 22718194 CCCACCATGAAGTAGTCGCCGGTCTTCGGAGCCTCGACACCGTAGGTCATCGCGACCGCG 22718253 Query 45318 AGCGCGTACACCGCGAGCTGAAAGTCATCCCCGGGCTTGAGCCCGGTCTTCCAGTCGACC 45377 ||||||||||| ||||||| ||||| || || || | | ||||||||| |||| Sbjct 22718254 AGCGCGTACACGCCGAGCTGGAAGTCGTCACCCGGTTGGTTCCCGGTCTTGTAGTCCCGG 22718313 Query 45378 ACCAGCACCTCACCGTCGAGCGCGAGCACCGCGTCGATGTAGCCCCGGATCTCTATCCCA 45437 || | | ||| ||||||| | ||| || ||||||||||| || || | | ||||| Sbjct 22718314 ACTCGAAGCTCCCCGTCGACCACGACGACGGCGTCGATGTATCCGCGAACCAGGATCCCG 22718373 Query 45438 TCGAGCTCGAACTCGGTCGCGAGCTCTACCCCCGGGGTGCCGTCCGGTGTGTGCCACACC 45497 |||||||||| |||| ||||| | | | || || |||||||| || ||| | | Sbjct 22718374 TCGAGCTCGATCTCGAAGTACAGCTCGATCGCTGGCGTACCGTCCGGGGTCACCCAGATC 22718433 Query 45498 TCTAGGCTCGGGTGGTTGTCGATCCAGTCCAGGGTCTTGTCCACCTGCTGCAGCCCGATA 45557 || ||| || | | || ||| | | | ||| || ||||||| ||| |||| Sbjct 22718434 TCCTGGCCCG---GAGTCTCCCGCCACGCGAAGAACTTCTCGACCTGCTCCAGGCCGACG 22718490 Query 45558 CCCCAGCGACGTTCGATGTCGTCCGCGCCGCGGTACGGCCCGGAGGCGAACCACCAGCCG 45617 | || || |||||||| | ||| |||||| || || |||||| || Sbjct 22718491 GTGTACCGGCGCTCGATGTCTCGCTGACCGTTGTACGGACCAGACCACGTCCACCACTCG 22718550 Query 45618 AGGTTAGGGGTCTCCTCGGT--AGCTTCGTTGATCCCGTCGGCGTACTCGGCC--TTGAA 45673 | ||| |||||||||||||| || || | ||| |||||| | ||| ||| Sbjct 22718551 AAGTTCGGGGTCTCCTCGGTGAAGGCTC--CAACGTCGTTGGCGTAGT--GCCAACGGAA 22718606 Query 45674 GATCTCATAGCACTCTTCGCGCGTCAGCGGTGAGCCGGCGAGCTTCGAGAGCATGTATTT 45733 || || | | ||| || |||||||||| |||| | || | | | | | Sbjct 22718607 CATGTCCTTGGCCTCGTCAAGCGTCAGCGGCATGCCGTAGGACTCCCATACCTCGACCGC 22718666 Query 45734 CTCAGCCACCGCGTGGACCCCGGTACCCTGCTGCAGCCAGGCCGCTGGGCGTCTCCACAC 45793 |||||| || ||||||| | | || |||||| |||||||||||||||| || |||||| Sbjct 22718667 CTCAGCGACAGCGTGGAACGCAGTCCCCTGCGGCAGCCAGGCCGCTGGCCGCTGCCACAC 22718726 >seq9 Length=46179939 Score = 141 bits (156), Expect = 3e-29 Identities = 395/600 (66%), Gaps = 26/600 (4%) Strand=Plus/Minus Query 45213 TCCCGCGTCCAGTCCGTCAGGTCGTACGGATACGTCGGCTTA---------CCGGTCTTC 45263 || |||||||| | |||||||||||| || | |||||||| || ||||| Sbjct 16532210 TCACGCGTCCACTTCGTCAGGTCGTAGGGCTTGGTCGGCTTCGGTGCCTTGCCCTTCTTC 16532151 Query 45264 GCCA---TGAAGTACACACCGCGCTT--GATC-TCGACTCCGTACAGCTGTTTCAACGCC 45317 ||| ||||||| | ||| ||| || | ||||| ||||| | | ||| Sbjct 16532150 CCCACCATGAAGTAGTCGCCGGTCTTCGGAGCCTCGACACCGTAGGTCATCGCGACCGCG 16532091 Query 45318 AGCGCGTACACCGCGAGCTGAAAGTCATCCCCGGGCTTGAGCCCGGTCTTCCAGTCGACC 45377 ||||||||||| ||||||| ||||| || || || | | ||||||||| |||| Sbjct 16532090 AGCGCGTACACGCCGAGCTGGAAGTCGTCACCCGGTTGGTTCCCGGTCTTGTAGTCCCGG 16532031 Query 45378 ACCAGCACCTCACCGTCGAGCGCGAGCACCGCGTCGATGTAGCCCCGGATCTCTATCCCA 45437 || | | ||| ||||||| | ||| || ||||||||||| || || | | ||||| Sbjct 16532030 ACTCGAAGCTCCCCGTCGACCACGACGACGGCGTCGATGTATCCGCGAACCAGGATCCCG 16531971 Query 45438 TCGAGCTCGAACTCGGTCGCGAGCTCTACCCCCGGGGTGCCGTCCGGTGTGTGCCACACC 45497 |||||||||| |||| ||||| | | | || || |||||||| || ||| | | Sbjct 16531970 TCGAGCTCGATCTCGAAGTACAGCTCGATCGCTGGCGTACCGTCCGGGGTCACCCAGATC 16531911 Query 45498 TCTAGGCTCGGGTGGTTGTCGATCCAGTCCAGGGTCTTGTCCACCTGCTGCAGCCCGATA 45557 || ||| || | | || ||| | | | ||| || ||||||| ||| |||| Sbjct 16531910 TCCTGGCCCG---GAGTCTCCCGCCACGCGAAGAACTTCTCGACCTGCTCCAGGCCGACG 16531854 Query 45558 CCCCAGCGACGTTCGATGTCGTCCGCGCCGCGGTACGGCCCGGAGGCGAACCACCAGCCG 45617 | || || |||||||| | ||| |||||| || || |||||| || Sbjct 16531853 GTGTACCGGCGCTCGATGTCTCGCTGACCGTTGTACGGACCAGACCACGTCCACCACTCG 16531794 Query 45618 AGGTTAGGGGTCTCCTCGGT--AGCTTCGTTGATCCCGTCGGCGTACTCGGCC--TTGAA 45673 | ||| |||||||||||||| || || | ||| |||||| | ||| ||| Sbjct 16531793 AAGTTCGGGGTCTCCTCGGTGAAGGCTC--CAACGTCGTTGGCGTAGT--GCCAACGGAA 16531738 Query 45674 GATCTCATAGCACTCTTCGCGCGTCAGCGGTGAGCCGGCGAGCTTCGAGAGCATGTATTT 45733 || || | | ||| || |||||||||| |||| | || | | | | | Sbjct 16531737 CATGTCCTTGGCCTCGTCAAGCGTCAGCGGCATGCCGTAGGACTCCCATACCTCGACCGC 16531678 Query 45734 CTCAGCCACCGCGTGGACCCCGGTACCCTGCTGCAGCCAGGCCGCTGGGCGTCTCCACAC 45793 |||||| || ||||||| | | || |||||| |||||||||||||||| || |||||| Sbjct 16531677 CTCAGCGACAGCGTGGAACGCAGTCCCCTGCGGCAGCCAGGCCGCTGGCCGCTGCCACAC 16531618 >seq8 Length=24646021 Score = 125 bits (138), Expect = 2e-24 Identities = 250/363 (69%), Gaps = 8/363 (2%) Strand=Plus/Minus Query 11517 TTCTACGACTCGCAGCG--GGCTCAGCATCACCCGGATCTACCTCGTAACGATCGGCCCC 11574 ||||||||||| ||||| | ||| || |||||||| || || || ||||| || | Sbjct 19508608 TTCTACGACTCCCAGCGCAGACTC--CACCACCCGGAGCTTCCCCGCAACGAGAGGTTGC 19508551 Query 11575 TGGAGGGGACGAC-GTTCGAGAAGTTCGTCGAGAACATGGACCCGGCTCGTGAGCGGATG 11633 |||| | | | || ||| ||||||| ||||||||| || || || || || || Sbjct 19508550 -GGAGCGACCTCCAGTGGGAGTGGTTCGTCAGGAACATGGAGCCCGCACGAAAGGGGTTG 19508492 Query 11634 CAGCAGGCGGACACCCGCGGGGACGCGCTGACTCACCTGACGCTGCGCGCC-GTCCGCGA 11692 |||||| ||| | | | ||| | || | ||||| || ||| | || ||||| Sbjct 19508491 TCGCAGGCCGACTCTCCTCAAGCTGCGGTCACCAAGCTGACCTTG-GCGACAGTGCGCGA 19508433 Query 11693 GGTGGAGAACGCAGGCCGTCAGCAGATCATCCACGCCGTCGAGAACGACCCGGAACCCCG 11752 ||||||| ||||| || | ||||||||| ||| ||| |||||||||| | || | Sbjct 19508432 AGTGGAGATGGCAGGTCGCCGACAGATCATCGGCGCTGTCAAGAACGACCCAGCTCCTCA 19508373 Query 11753 CGTCTTGCGGGGCTGGGCTCGCGTCGCGACCGGCAGGGAGACCTGCGCGTGGTGCCTGAT 11812 || || ||||||||| | ||||| ||||| | || || ||||| ||||| ||||| Sbjct 19508372 GATCGTGAAGGGCTGGGCGAGGGTCGCCACCGGGCGCGAAACATGCGCCTGGTGTCTGAT 19508313 Query 11813 GCTGATCAGCCGCGGACCTACGTACGTCCGGGCCGAGACCGCCGGTCTCGACCTTGATAC 11872 |||||| ||| || || |||| | ||| || | || ||||| |||| || || Sbjct 19508312 GCTGATTTCCCGTGGCCCCGAGTACCTTTCGGCGGATAGCGGGGGTCTTCACCTCGACAC 19508253 Query 11873 GGA 11875 || Sbjct 19508252 CGA 19508250 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 167862857076096