Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_031078.1 Length=50082 Score E Sequences producing significant alignments: (Bits) Value seq18 161 3e-35 >seq18 Length=36757632 Score = 161 bits (178), Expect = 3e-35 Identities = 393/581 (68%), Gaps = 32/581 (6%) Strand=Plus/Minus Query 33319 CAACGGTGAGCCGGGGTACTGGAACTCCAGCTACTCCAACGAGGGTGAGGTCGGCACGGT 33378 |||||| ||||||||| ||| || |||| ||||||| |||||| | | ||| Sbjct 22717623 CAACGGCGAGCCGGGGATGTGGGACAGCAGCCTGTCCAACGTCGGTGAGCCCAACGAGGT 22717564 Query 33379 CATCGCGACCAACCCGTGCGGCGAGATCGCTCTGGAGCCGACCGAGAACTGCAACCTCGG 33438 | || |||||||||||||| |||||| | ||||||||| ||| ||||||||| || Sbjct 22717563 CGTCTGCACCAACCCGTGCGGGGAGATCACGCTGGAGCCGTGGGAGCCCTGCAACCTAGG 22717504 Query 33439 GCATGTGAACCTGGACTACTTCGCC-CCGAC--CGAGAAGGGCGGCGGCATCCAGAAGGG 33495 ||| | ||||| | |||| | ||||| || |||| || | |||| | Sbjct 22717503 GCACATCAACCTCGCGGCGTTCGTCACCGACGCCGGGAAGACCGACTACATCGAC----- 22717449 Query 33496 CAAGCTGCTCCGAGCCCACCAGCTCATGACCCGCTTCCTGATGCGAGCCACCTACGGCGA 33555 ||| |||||||||||| || ||||| || |||||||| || || || | | | Sbjct 22717448 ----CTGATCCGAGCCCACCGTCTGATGACGCGGTTCCTGATCCGGGCGACGTTCTCAGC 22717393 Query 33556 CGTGACGGACGCGGAGCAGGCG-GCGAAGCTCGCGGCCAACCGGCGCATCGGCGTGGGTC 33614 || | || || || || || | | || | ||||||||||||||| || || | Sbjct 22717392 GGTCGCTGATCCGAAG-AGCCGAGAGGTTCTGGATCGCAACCGGCGCATCGGTGTTGGGC 22717334 Query 33615 ACCTCGGGGTCCAGGGCTTCCT----GGCCAAG-CAGGGTGTCCGCTACTCGTCGGC-CC 33668 ||||||| || ||| |||| |||| | |||| || | || ||| ||| || Sbjct 22717333 ACCTCGGAGT----GGCCTCCTATTTGGCCCTGACAGGCCGTAGG-TATTCGCAGGCACC 22717279 Query 33669 CGTACGTCGAGTCCTTC--CGCTGGCTGCTGGAGGATCTGTACGACGCGGTCCGCGAGGA 33726 || | | | || ||| |||| || || ||| || || | |||| | | Sbjct 22717278 CGGA-GACAAGCGGTTCACCGCTTTCT--TGCGGGAGATGGCCGCTGAGGTCGACAGAGC 22717222 Query 33727 GGCTCGGGAGTAC-GCCTTCCAGCTCCGCATCCCGGAGCCGGTGAAGGTGACGACCGTGG 33785 ||| ||||| | ||| | || | || ||||||| |||||| ||| | || |||| Sbjct 22717221 GGCCGAGGAGTTCAGCCATG-AGTTGCGGATCCCGGTGCCGGTCAAGAAGCGCACGGTGG 22717163 Query 33786 CCCCGACCGGCTCGATCGCGAAGCTGCCTGGTGTGAGCGAGGGCATCCACCCGATCTACG 33845 ||||||| || | ||||||||| ||||||| || || ||||| ||||||||||||| | Sbjct 22717162 CCCCGACAGGGACCATCGCGAAGATGCCTGGAGTCAGTGAGGGTATCCACCCGATCTTCT 22717103 Query 33846 CCCGGCACTTCCTGCGTCGAGTGCGCTTCTCGATGCCGGAC 33886 ||||| ||||| | || || | || |||||| ||| |||| Sbjct 22717102 CCCGGTACTTCATCCGGCGCATCCGGTTCTCGGTGCTGGAC 22717062 Score = 80.6 bits (88), Expect = 9e-11 Identities = 71/89 (80%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 33055 CGAGGCCATGGAGATCGACCACGCCATCGCGGAGTGCGTCGTCTCGGGTGGCGTCCGGCG 33114 ||| || |||||||||||||||||||||||| |||| || || | || || || || || Sbjct 22717937 CGATGCGATGGAGATCGACCACGCCATCGCGCAGTGTGTGGTGGCCGGAGGTGTTCGCCG 22717878 Query 33115 CTCGGCTCGCATGGCCATCGTGAAGTGGG 33143 |||||||||||||| || || | |||| Sbjct 22717877 GTCGGCTCGCATGGCGATGATGCACTGGG 22717849 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160138183299328