Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15]
1,376 sequences; 930,507,853 total letters
Query= NC_031078.1
Length=50082
Score E
Sequences producing significant alignments: (Bits) Value
seq18 161 3e-35
>seq18
Length=36757632
Score = 161 bits (178), Expect = 3e-35
Identities = 393/581 (68%), Gaps = 32/581 (6%)
Strand=Plus/Minus
Query 33319 CAACGGTGAGCCGGGGTACTGGAACTCCAGCTACTCCAACGAGGGTGAGGTCGGCACGGT 33378
|||||| ||||||||| ||| || |||| ||||||| |||||| | | |||
Sbjct 22717623 CAACGGCGAGCCGGGGATGTGGGACAGCAGCCTGTCCAACGTCGGTGAGCCCAACGAGGT 22717564
Query 33379 CATCGCGACCAACCCGTGCGGCGAGATCGCTCTGGAGCCGACCGAGAACTGCAACCTCGG 33438
| || |||||||||||||| |||||| | ||||||||| ||| ||||||||| ||
Sbjct 22717563 CGTCTGCACCAACCCGTGCGGGGAGATCACGCTGGAGCCGTGGGAGCCCTGCAACCTAGG 22717504
Query 33439 GCATGTGAACCTGGACTACTTCGCC-CCGAC--CGAGAAGGGCGGCGGCATCCAGAAGGG 33495
||| | ||||| | |||| | ||||| || |||| || | |||| |
Sbjct 22717503 GCACATCAACCTCGCGGCGTTCGTCACCGACGCCGGGAAGACCGACTACATCGAC----- 22717449
Query 33496 CAAGCTGCTCCGAGCCCACCAGCTCATGACCCGCTTCCTGATGCGAGCCACCTACGGCGA 33555
||| |||||||||||| || ||||| || |||||||| || || || | | |
Sbjct 22717448 ----CTGATCCGAGCCCACCGTCTGATGACGCGGTTCCTGATCCGGGCGACGTTCTCAGC 22717393
Query 33556 CGTGACGGACGCGGAGCAGGCG-GCGAAGCTCGCGGCCAACCGGCGCATCGGCGTGGGTC 33614
|| | || || || || || | | || | ||||||||||||||| || || |
Sbjct 22717392 GGTCGCTGATCCGAAG-AGCCGAGAGGTTCTGGATCGCAACCGGCGCATCGGTGTTGGGC 22717334
Query 33615 ACCTCGGGGTCCAGGGCTTCCT----GGCCAAG-CAGGGTGTCCGCTACTCGTCGGC-CC 33668
||||||| || ||| |||| |||| | |||| || | || ||| ||| ||
Sbjct 22717333 ACCTCGGAGT----GGCCTCCTATTTGGCCCTGACAGGCCGTAGG-TATTCGCAGGCACC 22717279
Query 33669 CGTACGTCGAGTCCTTC--CGCTGGCTGCTGGAGGATCTGTACGACGCGGTCCGCGAGGA 33726
|| | | | || ||| |||| || || ||| || || | |||| | |
Sbjct 22717278 CGGA-GACAAGCGGTTCACCGCTTTCT--TGCGGGAGATGGCCGCTGAGGTCGACAGAGC 22717222
Query 33727 GGCTCGGGAGTAC-GCCTTCCAGCTCCGCATCCCGGAGCCGGTGAAGGTGACGACCGTGG 33785
||| ||||| | ||| | || | || ||||||| |||||| ||| | || ||||
Sbjct 22717221 GGCCGAGGAGTTCAGCCATG-AGTTGCGGATCCCGGTGCCGGTCAAGAAGCGCACGGTGG 22717163
Query 33786 CCCCGACCGGCTCGATCGCGAAGCTGCCTGGTGTGAGCGAGGGCATCCACCCGATCTACG 33845
||||||| || | ||||||||| ||||||| || || ||||| ||||||||||||| |
Sbjct 22717162 CCCCGACAGGGACCATCGCGAAGATGCCTGGAGTCAGTGAGGGTATCCACCCGATCTTCT 22717103
Query 33846 CCCGGCACTTCCTGCGTCGAGTGCGCTTCTCGATGCCGGAC 33886
||||| ||||| | || || | || |||||| ||| ||||
Sbjct 22717102 CCCGGTACTTCATCCGGCGCATCCGGTTCTCGGTGCTGGAC 22717062
Score = 80.6 bits (88), Expect = 9e-11
Identities = 71/89 (80%), Gaps = 0/89 (0%)
Strand=Plus/Minus
Query 33055 CGAGGCCATGGAGATCGACCACGCCATCGCGGAGTGCGTCGTCTCGGGTGGCGTCCGGCG 33114
||| || |||||||||||||||||||||||| |||| || || | || || || || ||
Sbjct 22717937 CGATGCGATGGAGATCGACCACGCCATCGCGCAGTGTGTGGTGGCCGGAGGTGTTCGCCG 22717878
Query 33115 CTCGGCTCGCATGGCCATCGTGAAGTGGG 33143
|||||||||||||| || || | ||||
Sbjct 22717877 GTCGGCTCGCATGGCGATGATGCACTGGG 22717849
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 160138183299328
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |