Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_031087.1 Length=168272 Score E Sequences producing significant alignments: (Bits) Value seq82 194 2e-44 >seq82 Length=657493 Score = 194 bits (214), Expect = 2e-44 Identities = 316/455 (69%), Gaps = 0/455 (0%) Strand=Plus/Plus Query 141245 CATCAGGTTATTAATCTGAACGCCATAATCTAAATGACGAATACGGTTTTCATCTACACC 141304 ||||| |||||||| || || ||||||| | ||||| | | ||||| || | || Sbjct 460820 CATCAATTTATTAATTTGTACTGCATAATCAACGTGACGTACTCTATTTTCTTCAATGCC 460879 Query 141305 TTTGTTGTTCTTAAGTACGAGGAGGTTTTCAACTTCCAAGTGCCAGATTGGATAGTACAG 141364 | || || || | || | | |||||| ||| || ||||| |||||||| | | Sbjct 460880 CCTATTATTTTTTAAAACTAATAAACTTTCAATTTCAAAATGCCATATTGGATAAAATAT 460939 Query 141365 TGTCGCCGCGCCACCACGGACTCCACCTTGGGAGCAGGATTTAACTGCTGTTTGGAAGTG 141424 || ||||| ||||| | ||||| ||||| || |||||||| || || |||| || || Sbjct 460940 AGTTGCCGCTCCACCTCTAACTCCTCCTTGAGAACAGGATTTTACAGCACTTTGAAAATG 460999 Query 141425 TTTCCAGAAAGGAATAACTCCAGTATGTTTGACTTCACCGAATCCAATTTTTGAACCCTC 141484 ||| | ||||||||| |||||||| |||| || || ||| ||| | Sbjct 461000 TTTATAAAAAGGAATACAACCAGTATGAAATGCTTCGCCATTTCTAATAGGACTACCTAC 461059 Query 141485 GGCGCGAATCATGCCTGCATTAATACCAATACCTGCACGCTTACTGATGTATTTCGTAAT 141544 || ||||| | || |||||||||||||| ||||| || | | | ||||| ||| Sbjct 461060 TGCACGAATTTTTCCAGCATTAATACCAATTCCTGCTCGTTGAGAAACATATTTTACAAT 461119 Query 141545 TGATGCAGCAGCTTCGTTAATTGAATTAAGACTATCACCACCTTCAATAACCACGCATGA 141604 || || || ||||||| |||| ||| ||||| ||| |||||| | || ||||| Sbjct 461120 AGAACTAGTAGTAGCGTTAATAGAATCTAGATTATCATCACATTCAATTAAAACACATGA 461179 Query 141605 ACTGAACTGGCGTGTCGGAGTACGAACACCAGACATAATTGGTGTTGGCAATGAAATCTT 141664 || || || || || ||||| | ||| ||||||||||||||||| || || ||||| || Sbjct 461180 GCTAAATTGTCGAGTAGGAGTTCTAACTCCAGACATAATTGGTGTCGGTAAAGAAATTTT 461239 Query 141665 TTTAGTAGAAACTGCATCATAGAAACGAATAACGT 141699 ||| |||| |||| ||| ||||| ||||| Sbjct 461240 GAAAGTTGAAATGGCATTATAAAAACGCTGAACGT 461274 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 538333140510720