Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_031090.1 Length=169621 Score E Sequences producing significant alignments: (Bits) Value seq82 178 1e-39 >seq82 Length=657493 Score = 178 bits (196), Expect = 1e-39 Identities = 899/1412 (64%), Gaps = 57/1412 (4%) Strand=Plus/Minus Query 61696 CGTTTTTATGATGCCGTTTCTACTCATCAAGTTTCATTGCCTACTCCAATTATGGCAGGT 61755 ||||||||| ||||| |||| ||| || |||| || || || ||||||||| | || Sbjct 461266 CGTTTTTATAATGCCATTTCAACTTTCAAAATTTCTTTACCGACACCAATTATGTCTGGA 461207 Query 61756 GCTCGTACTCCGACTCGCCAGTTCTCTAGTT---GTGTAGTTATTGAAGCCGGTGATTCG 61812 | | | ||||| ||||| || || ||| | |||| | |||||| | |||| Sbjct 461206 GTTAGAACTCCTACTCGACAATT---TAGCTCATGTGTTTTAATTGAATGTGATGATAAT 461150 Query 61813 TTAAAATCTATTAACAAAACTTCAGCATCAATTATTGAATATATTTCTAAACGAGCTGGT 61872 || | ||||||||| ||| | || ||| | ||||| ||||| ||||||| || Sbjct 461149 CTAGATTCTATTAACGCTACTACTAGTTCTATTGTAAAATATGTTTCTCAACGAGCAGGA 461090 Query 61873 ATAGGTATCAACGTTGGTATGCTTCGTGCAGAAGGTTCTAAGATCGGTATGGGCGAAGTT 61932 || ||||| || | ||| | ||||||||| |||| | || | | ||||||| Sbjct 461089 ATTGGTATTAATGCTGGAAAAATTCGTGCAGTAGGTAGTCCTATTAGAAATGGCGAAGCA 461030 Query 61933 CGACATACGGGTGTTATTCCATTCTGGAAACATTTCCAAACTGCAGTAAAATCTTGTTCT 61992 ||||| ||| |||||| || | |||||||| |||| ||| |||||||| |||||| Sbjct 461029 TTTCATACTGGTTGTATTCCTTTTTATAAACATTTTCAAAGTGCTGTAAAATCCTGTTCT 460970 Query 61993 CAAGGTGGTATTCGTGGTGGTGCTGCTACAGCGTATTATCCGATGTGGCACTTAGAAGTA 62052 ||||| || || | ||||| || || || | |||||| || ||||| || ||| | Sbjct 460969 CAAGGAGGAGTTAGAGGTGGAGCGGCAACTATATTTTATCCAATATGGCATTTTGAAATT 460910 Query 62053 GAGAACCTATTAGTTCTGAAAAATAACAAAGGCGTGGATGAAAACCGTATTCGACATATG 62112 || | |||||||| | |||||||| | ||| | || ||||| | | || || | Sbjct 460909 GAAAGTTTATTAGTTTTAAAAAATAATAGGGGCATTGAAGAAAATAGAGTACGTCACGTT 460850 Query 62113 GACTACGGAATTCAGATTAATGACCTTATGATGGAACGCCTTGGTA-----AAAATGATT 62167 || || | | | || |||||| | | ||| || | || || |||| Sbjct 460849 GATTATGCAGTACAAATTAATAAATTGATGTATCAAAG-ATTATTATCAGGAAAA----A 460795 Query 62168 ATATTACTTTATTTAGCCCTCACGAAATGTCAGGCGAAC-TATACTACTCGTTCTTTGAA 62226 | ||||| ||||||||||| | |||| | ||| |||| | | || ||| Sbjct 460794 AAATTACATTATTTAGCCCGTCTG--ATGT--TCCTAACTTATATAAATATTTTTTTTCT 460739 Query 62227 GATCAAGATAAATTCCGTGAGCTTTATGAGAAAGCTGAAAAAGACCCAACAATCAGAAAG 62286 ||||||| ||||| || ||| || ||||||| | || || | || Sbjct 460738 AATCAAGAAAAATTTGAAGAAAAATATATTCAATATGAAAAAAATAAAAATATACGGAAA 460679 Query 62287 AAAAGAATCAAAGCACTAGAACTCTTTGAATTGTTCATGACTGAACGTTCTGGCACTGCT 62346 ||||| || |||||| |||| | ||| || ||||| ||| | | || | Sbjct 460678 AAAAGTATAAAAGCATTAGATTTATTTTCGTTAATCATGCAAGAAAGAACATCTACAGGA 460619 Query 62347 CGAATTTATCCACAGTTTGTTGATAACACGAATAACTACACTCCGTTTATTCGTGAAAAA 62406 || |||||| ||| ||| ||| | ||| | | | | |||| || | || | Sbjct 460618 CGTATTTATATACAAAATGTAGATCATTGTAATTCACATAGTGCATTTAATCCTAAATTA 460559 Query 62407 GCTCCAATTCGTCAGAGTAACTTATGTTGTGAAATCGCTATTCCAACTAATGATGTGAAT 62466 ||||||| | || ||| ||||| | ||||| || | || ||||| | | ||| Sbjct 460558 TCTCCAATAAGACAATCTAATTTATGCTTAGAAATTACTTTACCCACTAAATCTTTAAAT 460499 Query 62467 GGTCCTGATGCT---------GAAATTGGTTTATGTACGTTATCTGCTTTTGTATTAGAT 62517 | ||||| | ||||||| | ||||| |||||||||||| |||| Sbjct 460498 AATATTGATGATAAAAAAGGAGAAATTGCACTTTGTACATTATCTGCTTTTAATTTAGGA 460439 Query 62518 AAATTTGATTGGCAAGACCAAGATAAAATTAATGAACTTGCTGAAGTACAAGTACGTGCA 62577 | || || | | || |||| |||| ||| | ||| | || ||| |||||| Sbjct 460438 ACTATTAATAATCTA-AC--AGAT---TTTAAAGAATTATCTGTATTATCAGTTCGTGCA 460385 Query 62578 CTTGATAACCTGTTAGACTATCAAGATTATCCGGTCCCAGAAGCTTTAAA---AGCTAAA 62634 |||||| | | ||||| |||||| ||||||| | || |||| | | ||||| Sbjct 460384 CTTGATGAAATATTAGAATATCAAAATTATCCAATATTAGCAGCTAAAGAATCAGCTATT 460325 Query 62635 AAGCGTCGTAATCTTGGTGTTGGTGTTACGAACTATGCTGCATGGTTAGCT---TCTAAC 62691 | ||| | | ||| ||||||| | || | ||| | ||||| |||| Sbjct 460324 TCTAGACGTTCTTTGGGTATTGGTGTAATCAATTTTGCATATTACCTAGCTAAAAATAAC 460265 Query 62692 -TTTGC--TTCATATGAAGACGCTAACGATTTGACTCAT-GAATTGTTTGAGAGATTGCA 62747 | || |||| ||| || || | || || ||| ||| | ||||| |||| Sbjct 460264 GTACGCTATTCAGATGGTAGTGCAAAAAACTTAACACATAGAACT-TTTGAAGCCATGCA 460206 Query 62748 ATATGGCCTTATCA-AAGCTTCAATCAAACTCGCCAAAGAAAAAGGACCTTGTGAGTATT 62806 |||| |||| | |||| || | | || |||||||||||| | ||| || Sbjct 460205 ATAT-TATTTATTACAAGCCTCTTGTGATTTAGCAAAAGAAAAAGGAGCATGT--TCTTT 460149 Query 62807 ATTCA--GACACTAAATGGTCTAGAGGCGAATTACCTATCGACTGGTACAATaaaaaaaT 62864 ||| | ||||||| | | | ||| |||||||||| || ||||| ||| | || Sbjct 460148 ATTTAATCACACTAATTATTATTTAGGTAAATTACCTATAGATACATACAAAAAAGACAT 460089 Query 62865 TGACCAAATCGCAGCCCCGAACTACGTC--TGTGACTGGGAAGAACTTCGAGCTGAACTC 62922 ||| |||| || |||| | | | || ||| | | | || || || | Sbjct 460088 TGATAAAAT--ATGCGATGAACCATTGCATTTAGATTGGAATATATTGCGTTCTAAAATT 460031 Query 62923 AAAGAACATGGAATTCGTAACTCAACGTTGTCTGCACTCATGCCTTGTGAGTCAAGCAGT 62982 ||| |||||||| | | |||||||| || |||||||| ||||||| || || | | Sbjct 460030 AAAAAACATGGATTAAGAAACTCAACATTATCTGCACTTATGCCTTCAGAAACATCCTCT 459971 Query 62983 CAAGTATCTAACTCTACAAACGGGATTGAACCGCCGCGTGGTCCAGTGAGTATTAAAGAA 63042 ||| ||||||| | || || || |||||||| || | ||| | |||||||||| | Sbjct 459970 CAAATATCTAATGCAACTAATGGAATTGAACCACCAAGAGGTTTTATTAGTATTAAAGTA 459911 Query 63043 TCTAAAGAAGGCAACTTCCGTCAGGTTGTTCC 63074 || ||||| || | || ||||| || ||||| Sbjct 459910 TCAAAAGATGGAATATTACGTCAAGTAGTTCC 459879 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 542649866261760