Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_031095.1 Length=168758 Score E Sequences producing significant alignments: (Bits) Value seq82 185 9e-42 >seq82 Length=657493 Score = 185 bits (204), Expect = 9e-42 Identities = 314/455 (69%), Gaps = 0/455 (0%) Strand=Plus/Minus Query 136347 ACGTTATTCGTTTCTATGATGCAGTTTCTACTAAAAAGATTTCATTGCCAACACCAATTA 136406 ||||| ||||| ||| |||| |||| ||| || ||||| || || |||||||||| Sbjct 461274 ACGTTCAGCGTTTTTATAATGCCATTTCAACTTTCAAAATTTCTTTACCGACACCAATTA 461215 Query 136407 TGTCTGGTGTTCGTACTCCAACCCGCCAGTTCAGTTCATGCGTAGTTATTGAAGGTGGTG 136466 ||||||| ||| | ||||| || || || || || ||||| || | |||||| ||| || Sbjct 461214 TGTCTGGAGTTAGAACTCCTACTCGACAATTTAGCTCATGTGTTTTAATTGAATGTGATG 461155 Query 136467 ATAGTCTTAATTCAATTAACGAAGCCGCTGCATCAATTACGAAATACATTAGTAAGCGTG 136526 ||| ||| |||| ||||||| | || || ||| ||||| || | | || | Sbjct 461154 ATAATCTAGATTCTATTAACGCTACTACTAGTTCTATTGTAAAATATGTTTCTCAACGAG 461095 Query 136527 CTGGTATTGGTATTAATGCGGGGATGATTCGTGCAGAAGGATCAAAAATTGGATTCGGTG 136586 | || |||||||||||||| || | |||||||||| ||| ||| || || | Sbjct 461094 CAGGAATTGGTATTAATGCTGGAAAAATTCGTGCAGTAGGTAGTCCTATTAGAAATGGCG 461035 Query 136587 AAGTCAAGCATACTGGTGTTATTCCTTTCTGGAAACACTTCCAAACCGCAGTTAAGTCAT 136646 ||| ||||||||| ||||||||| | ||||| || |||| || || || || | Sbjct 461034 AAGCATTTCATACTGGTTGTATTCCTTTTTATAAACATTTTCAAAGTGCTGTAAAATCCT 460975 Query 136647 GCTCCCAAGGCGGAGTCCGTGGTGGTGCAGCTACACTGTATTATCCGATGTGGCACTTGG 136706 | || ||||| ||||| | ||||| || || || | | |||||| || ||||| || | Sbjct 460974 GTTCTCAAGGAGGAGTTAGAGGTGGAGCGGCAACTATATTTTATCCAATATGGCATTTTG 460915 Query 136707 AAGTTGAAAACCTCCTCGTACTTAAGAACAACAAAGGTGTAGATGAAAACCGTATTCGCC 136766 || |||||| | | || | || || || | || | || ||||| | | || | Sbjct 460914 AAATTGAAAGTTTATTAGTTTTAAAAAATAATAGGGGCATTGAAGAAAATAGAGTACGTC 460855 Query 136767 ATTTAGATTATGGTGTTCAGATTAATAACCTGATG 136801 | | ||||||| || || |||||||| ||||| Sbjct 460854 ACGTTGATTATGCAGTACAAATTAATAAATTGATG 460820 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 539888313761280