Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_031102.1 Length=42429 Score E Sequences producing significant alignments: (Bits) Value seq9 1373 0.0 >seq9 Length=46179939 Score = 1373 bits (1522), Expect = 0.0 Identities = 978/1123 (87%), Gaps = 6/1123 (1%) Strand=Plus/Minus Query 29703 GCGCGTCGCGTCGGGCCGTTGTTCCTGGTCGACGCCGAAGCCGCGCGGCTGTACGGCGAA 29762 ||||| |||||||| |||||||||||||||||||||||||||||||| || ||||||||| Sbjct 27699567 GCGCGACGCGTCGGACCGTTGTTCCTGGTCGACGCCGAAGCCGCGCGTCTCTACGGCGAA 27699508 Query 29763 GTCTTCAAGGCACGCCGAGCGCTCGACGCATACACCGGCCGCACCAGCTCCGACAACGAT 29822 || |||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| Sbjct 27699507 GTGTTCAAGGCACGCCGAGCGCTCGACGCGTACACCGGCCGCACCGGCTCCGACAACGAT 27699448 Query 29823 TCCGATTCCGAATGATGGGCACCCTCGGCGCCTTGTGCGGACTGGCCGGCGACGCCCTGA 29882 ||||||||||||||| |||||||||||||||| | ||||| |||||||||||||| |||| Sbjct 27699447 TCCGATTCCGAATGAAGGGCACCCTCGGCGCCCTCTGCGGTCTGGCCGGCGACGCTCTGA 27699388 Query 29883 TCGCCGTCGGGTTCGCACTCCGCGAGCACGACCGCGGGTTCTCGGACTACGAGGCCGGCG 29942 | |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| Sbjct 27699387 TTGCCGTCGGGTTCGCGCTCCGCGAGCATGACCGCGGGTTCTCGGACTACGAGGCCGGCG 27699328 Query 29943 ACTACCTGGCACCGGCCGAGCCGCCGGCACCGACTGACGACCTGTCGATTCCGCTCGGCG 30002 |||||||| | ||||||||| ||||||| ||| ||||||| ||||||||||||||||||| Sbjct 27699327 ACTACCTGACGCCGGCCGAGTCGCCGGCGCCGGCTGACGATCTGTCGATTCCGCTCGGCG 27699268 Query 30003 ACGTCCGCGCGGCGCTCGACGACCTGTCTGACTCGAAGCTGCTCAACATCGCCGCGACCA 30062 |||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| Sbjct 27699267 ACGTCCGCGCGGCGCTCGACGACCTGTCCGATTCGAAGCTGCTCAACATCGCCGCGACCA 27699208 Query 30063 TCATCGCCGGCTGGAAACCGATTCTGCTCAAGACCACGGGCGATCTGACCGACGTCGACG 30122 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 27699207 TCATCGCCGGCTGGAAACCGATTCTGCTCAAGACCACCGGCGATCTGACCGACGTCGACG 27699148 Query 30123 TCCTGGTCGACGCTCTGCGCGATCGCGCTACCCAATATGCCGTCGTCGAGGCCGACGACG 30182 |||||||||||||||||||||||||||| |||||||| |||||||| ||| |||||||| Sbjct 27699147 TCCTGGTCGACGCTCTGCGCGATCGCGCAACCCAATACGCCGTCGTAGAGCTCGACGACG 27699088 Query 30183 TTCCGCCGGCTGCCGGCGCCCCGAACAGCTCGCCCGAACGCGGCGAGTGATGGACGGCCG 30242 |||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 27699087 TTCCGCCGGCTGACGGCGCCCCGAACAACTCGCCCGAACGCGGCGAGTGATGGACGGCCG 27699028 Query 30243 GCGCCCCGCTGATACCGGAACGCCGGCCCCGACACCCGAAGAAAGGGTTCGAATGTCAAC 30302 ||||||||||||||||||||||||||||| ||||||||||| || |||||||||||| Sbjct 27699027 GCGCCCCGCTGATACCGGAACGCCGGCCCTGACACCCGAAGGAATAGTTCGAATGTCACA 27698968 Query 30303 AGACAACCTACGGCCGATCTGGACGCCCGACGACTACCGGCAGGCCCTCCGTGACGCAGC 30362 ||||| ||||||||||||||||| |||||||| ||| || ||||| | || || || || Sbjct 27698967 CGACAATCTACGGCCGATCTGGACTCCCGACGATTACTGGAAGGCCGTTCGCGAAGCGGC 27698908 Query 30363 CAAGCAGTCCGAACACCGCGGCGCCGTCAACGACGACCCACACTACGCCCGCTCGG---- 30418 | |||| |||||||||||||||| ||||||| || || || ||| | | || | Sbjct 27698907 CGAGCACGCCGAACACCGCGGCGCGATCAACGAAGATCCGCATTACAGCAGGTCAGCGAC 27698848 Query 30419 --CATCGGCCGAACCGCGGCGAGGGGCCAGCGCGCGCGCCGTACTGCGCGTGCTGATCGC 30476 | || |||| || || ||||| ||||| || || | || | |||| | || |||| Sbjct 27698847 ACCGCCGACCGAGCCTCGTCGAGGCGCCAGTGCCCGGACTGTGATTCGCGCGTTGCTCGC 27698788 Query 30477 GATGGGATCCGGCGCCGTGCTCGTTGCGATGTTCCTGCTGTGGCTGGCAGCGCCAGCCAA 30536 |||| |||||||||||||| || || |||||| |||| |||||||| |||| | ||| Sbjct 27698787 CATGGCGTCCGGCGCCGTGCTGGTCGCAATGTTCGTGCTCTGGCTGGCGCCGCCGGTCAA 27698728 Query 30537 GGCCGATCCGCCCGGCTGCCTGACGCAATTCTGGCTGATTCCGTTCAAGTCGAACACGCG 30596 ||| ||| || | |||||| ||||| |||||| ||||||||||| ||||||| ||||| Sbjct 27698727 GGCGGATTCGTCGAACTGCCTCACGCAGTTCTGGTTGATTCCGTTCCAGTCGAATACGCG 27698668 Query 30597 CACGATCTGCGACGGTCCGATCCAGCCGGACGGATCATGGCAGCGCGCCCGCGAATTCTG 30656 ||||||||||||||| |||||||||||||||||||| |||||||| |||||||| ||||| Sbjct 27698667 CACGATCTGCGACGGGCCGATCCAGCCGGACGGATCCTGGCAGCGGGCCCGCGAGTTCTG 27698608 Query 30657 GTCGCCGGCCTACACCGCGCCGGCCCGGACATCGTGCTCAGGCGGATATCGGTACTCCAA 30716 ||||||||||||||| |||||||| || | || ||||| || || || || || || | Sbjct 27698607 GTCGCCGGCCTACACGGCGCCGGCGCGCTCGTCCTGCTCTGGTGGCTACCGCTATTCGAG 27698548 Query 30717 CTGCACGCACTACCCCGAGCAGTTCGTTCCGCGAAAGTCCCTCGGTGTCGACGTCTATCC 30776 |||||| ||||||| |||| ||||||||||| ||||| ||| ||||| |||||||| Sbjct 27698547 CTGCACCTACTACCCGGAGCGTTTCGTTCCGCGGAAGTCGGCCGGCGTCGAGGTCTATCC 27698488 Query 30777 CGTCCGGCCCGAAACCGTGCTGCACGACGAGCCGGGGCACATC 30819 ||| || || ||||||||||||| |||||| || || |||||| Sbjct 27698487 CGTGCGACCGGAAACCGTGCTGCCCGACGAACCCGGACACATC 27698445 Score = 161 bits (178), Expect = 3e-35 Identities = 171/223 (77%), Gaps = 8/223 (4%) Strand=Plus/Minus Query 31171 CACGACGTGAAGATCGAACCGCGCTGGTTCGAGCGGATCCGGCAGAACGAGAAGTTCGCC 31230 ||||||||||||||||| |||||||||||||| ||||||| |||| ||||||||||||| Sbjct 27698248 CACGACGTGAAGATCGAGCCGCGCTGGTTCGACCGGATCCAGCAGTCCGAGAAGTTCGCC 27698189 Query 31231 GAAGTCCGCTACGACGATCGCGACTACCAGACCGGCGACACGATCCGATTCCAGCGCAGT 31290 |||||||| |||||||| |||||||| ||| |||||||| ||||| ||| ||||| Sbjct 27698188 GAAGTCCGTTACGACGACCGCGACTATCAGGCCGGCGACCGAATCCGCTTCTGGCGCA-- 27698131 Query 31291 GACACCGAT-GGCACGTTCCATTGGCACTACGTCACGCGCACAATCACGCACGTTCTGCG 31349 | ||| ||| || | ||||| | || ||| || || ||||| ||||| Sbjct 27698130 ----CGGATCGGCCCGAGT-ACGGGCACAGCATCGAACGCCGGATTACCCACGTGCTGCG 27698076 Query 31350 CGGCATGGAGGCGATCGAAGACGGCTACGTCGTGCTGTCACTG 31392 |||| | || | || ||||||||| ||||||||||| ||| Sbjct 27698075 CGGCGTCGACGGACTCCGAGACGGCTATGTCGTGCTGTCGCTG 27698033 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 135648983459392