Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_031111.1 Length=53623 Score E Sequences producing significant alignments: (Bits) Value seq18 167 8e-37 seq9 167 8e-37 seq8 87.8 6e-13 >seq18 Length=36757632 Score = 167 bits (184), Expect = 8e-37 Identities = 436/653 (67%), Gaps = 43/653 (7%) Strand=Plus/Plus Query 44902 TCCCGCGTCCAGTCCGTCAGGTCGTACGGATACGTCGGCTTA---------CCGGTCTTC 44952 || |||||||| | |||||||||||| || | |||||||| || ||||| Sbjct 22718134 TCACGCGTCCACTTCGTCAGGTCGTAGGGCTTGGTCGGCTTCGGTGCCTTGCCCTTCTTC 22718193 Query 44953 GCCA---TGAAGTACACGCCGCGCGT--GATC-TCGACGCCGTACAGCTGTTTCAACGCC 45006 ||| ||||||| ||||| | | || | ||||| ||||| | | ||| Sbjct 22718194 CCCACCATGAAGTAGTCGCCGGTCTTCGGAGCCTCGACACCGTAGGTCATCGCGACCGCG 22718253 Query 45007 AGCGCGTACACCGCGAGCTGAAAGTCATCTCCCGGCTTAAGGCCAGTCTTGTGGTCTACA 45066 ||||||||||| ||||||| ||||| || ||||| | || ||||||| ||| Sbjct 22718254 AGCGCGTACACGCCGAGCTGGAAGTCGTCACCCGGTTGGTTCCCGGTCTTGTAGTCCCGG 22718313 Query 45067 ACCATCG--GCTCGCCGTCGAGGATCAGTACCGCGTCGATGAAGCCTCTGATCTGGATAT 45124 || ||| |||| ||||||| | | || ||||||||| | || | | | |||| Sbjct 22718314 AC--TCGAAGCTCCCCGTCGACCACGACGACGGCGTCGATGTATCCGCGAACCAGGATCC 22718371 Query 45125 CCCCGAGCATGAAGTCAAGATCCAGCTCGATCCCGGGCTTGCCGTCCGGGGTGCTCCATA 45184 | ||||| || || | | |||||||||| | ||| | ||||||||||| ||| | Sbjct 22718372 CGTCGAGCTCGATCTCGAAGTACAGCTCGATCGCTGGCGTACCGTCCGGGGTCACCCAGA 22718431 Query 45185 CCTCCAGCGAGGGATGGTTCTCGATCCAGTCGATGACCTTGTCCACCTGCTCCAGCCCGA 45244 |||| | ||| |||| ||| ||| || ||| || ||||||||||| |||| Sbjct 22718432 TCTCCTGGCCCGGAG---TCTCCCGCCACGCGAAGAACTTCTCGACCTGCTCCAGGCCGA 22718488 Query 45245 TCTTCCAGCGTCGCTCGACGTCGTCG-GGACCGCGGTACGGCCCGGACGAGAACCACCAG 45303 | | || ||||||| ||| ||| ||||| |||||| || ||| | |||||| Sbjct 22718489 CGGTGTACCGGCGCTCGATGTC-TCGCTGACCGTTGTACGGACCAGACCACGTCCACCAC 22718547 Query 45304 TCGAGGTTCGGCGTGACGTCCGTGGACTCGCTGATGCCTTCCTGGTACG-AGTCC---TT 45359 |||| |||||| || | || ||| | | | | | | | ||| || ||| | Sbjct 22718548 TCGAAGTTCGGGGTCTCCTCGGTGAAGGCTCCAACGTCGT--TGG--CGTAGTGCCAACG 22718603 Query 45360 GAACACCTCGTACGCCTCTTCGCGGGTCATCGGGCCACCCGGCTCGAAACCCAGCCGGCG 45419 ||||| || | ||||| || | |||| ||| || | | || |||| | || Sbjct 22718604 GAACATGTCCTTGGCCTCGTCAAGCGTCAGCGG--CATGCCGTAGGACTCCCATACCTCG 22718661 Query 45420 A-AGCATGTAGTGCTCAGCCACCGCGTGGACCGCGGTCCCCTGCTGGAGCCACGCCGCCG 45478 | || |||||| || ||||||| ||| ||||||||| | ||||| ||||| | Sbjct 22718662 ACCGC--------CTCAGCGACAGCGTGGAACGCAGTCCCCTGCGGCAGCCAGGCCGCTG 22718713 Query 45479 GTCGACGCCAGACCTTGTCAATCCGGGCCAGTTTGTACGCCATCGGGCATTTC 45531 | || |||| |||||||| ||||| || || ||||||||||||||||| ||| Sbjct 22718714 GCCGCTGCCACACCTTGTCGATCCGAGCGAGCTTGTACGCCATCGGGCACTTC 22718766 >seq9 Length=46179939 Score = 167 bits (184), Expect = 8e-37 Identities = 436/653 (67%), Gaps = 43/653 (7%) Strand=Plus/Minus Query 44902 TCCCGCGTCCAGTCCGTCAGGTCGTACGGATACGTCGGCTTA---------CCGGTCTTC 44952 || |||||||| | |||||||||||| || | |||||||| || ||||| Sbjct 16532210 TCACGCGTCCACTTCGTCAGGTCGTAGGGCTTGGTCGGCTTCGGTGCCTTGCCCTTCTTC 16532151 Query 44953 GCCA---TGAAGTACACGCCGCGCGT--GATC-TCGACGCCGTACAGCTGTTTCAACGCC 45006 ||| ||||||| ||||| | | || | ||||| ||||| | | ||| Sbjct 16532150 CCCACCATGAAGTAGTCGCCGGTCTTCGGAGCCTCGACACCGTAGGTCATCGCGACCGCG 16532091 Query 45007 AGCGCGTACACCGCGAGCTGAAAGTCATCTCCCGGCTTAAGGCCAGTCTTGTGGTCTACA 45066 ||||||||||| ||||||| ||||| || ||||| | || ||||||| ||| Sbjct 16532090 AGCGCGTACACGCCGAGCTGGAAGTCGTCACCCGGTTGGTTCCCGGTCTTGTAGTCCCGG 16532031 Query 45067 ACCATCG--GCTCGCCGTCGAGGATCAGTACCGCGTCGATGAAGCCTCTGATCTGGATAT 45124 || ||| |||| ||||||| | | || ||||||||| | || | | | |||| Sbjct 16532030 AC--TCGAAGCTCCCCGTCGACCACGACGACGGCGTCGATGTATCCGCGAACCAGGATCC 16531973 Query 45125 CCCCGAGCATGAAGTCAAGATCCAGCTCGATCCCGGGCTTGCCGTCCGGGGTGCTCCATA 45184 | ||||| || || | | |||||||||| | ||| | ||||||||||| ||| | Sbjct 16531972 CGTCGAGCTCGATCTCGAAGTACAGCTCGATCGCTGGCGTACCGTCCGGGGTCACCCAGA 16531913 Query 45185 CCTCCAGCGAGGGATGGTTCTCGATCCAGTCGATGACCTTGTCCACCTGCTCCAGCCCGA 45244 |||| | ||| |||| ||| ||| || ||| || ||||||||||| |||| Sbjct 16531912 TCTCCTGGCCCGGAG---TCTCCCGCCACGCGAAGAACTTCTCGACCTGCTCCAGGCCGA 16531856 Query 45245 TCTTCCAGCGTCGCTCGACGTCGTCG-GGACCGCGGTACGGCCCGGACGAGAACCACCAG 45303 | | || ||||||| ||| ||| ||||| |||||| || ||| | |||||| Sbjct 16531855 CGGTGTACCGGCGCTCGATGTC-TCGCTGACCGTTGTACGGACCAGACCACGTCCACCAC 16531797 Query 45304 TCGAGGTTCGGCGTGACGTCCGTGGACTCGCTGATGCCTTCCTGGTACG-AGTCC---TT 45359 |||| |||||| || | || ||| | | | | | | | ||| || ||| | Sbjct 16531796 TCGAAGTTCGGGGTCTCCTCGGTGAAGGCTCCAACGTCGT--TGG--CGTAGTGCCAACG 16531741 Query 45360 GAACACCTCGTACGCCTCTTCGCGGGTCATCGGGCCACCCGGCTCGAAACCCAGCCGGCG 45419 ||||| || | ||||| || | |||| ||| || | | || |||| | || Sbjct 16531740 GAACATGTCCTTGGCCTCGTCAAGCGTCAGCGG--CATGCCGTAGGACTCCCATACCTCG 16531683 Query 45420 A-AGCATGTAGTGCTCAGCCACCGCGTGGACCGCGGTCCCCTGCTGGAGCCACGCCGCCG 45478 | || |||||| || ||||||| ||| ||||||||| | ||||| ||||| | Sbjct 16531682 ACCGC--------CTCAGCGACAGCGTGGAACGCAGTCCCCTGCGGCAGCCAGGCCGCTG 16531631 Query 45479 GTCGACGCCAGACCTTGTCAATCCGGGCCAGTTTGTACGCCATCGGGCATTTC 45531 | || |||| |||||||| ||||| || || ||||||||||||||||| ||| Sbjct 16531630 GCCGCTGCCACACCTTGTCGATCCGAGCGAGCTTGTACGCCATCGGGCACTTC 16531578 >seq8 Length=24646021 Score = 87.8 bits (96), Expect = 6e-13 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 10517 TTCTACGACTCGCAGCGGGCGCAGCACCACCCGGACCTCCCTCGTAACGATCGGCCCCTG 10576 ||||||||||| ||||| | ||||||||||| || || || ||||| || | | Sbjct 19508608 TTCTACGACTCCCAGCGCAGACTCCACCACCCGGAGCTTCCCCGCAACGAGAGGTTGC-G 19508550 Query 10577 GAGGGGACGAC-GTTCGAGAAGTTCGTCGAGAACATGGACCCGGCTCGTGAGCGGATGCA 10635 ||| | | | || ||| ||||||| ||||||||| || || || || || || Sbjct 19508549 GAGCGACCTCCAGTGGGAGTGGTTCGTCAGGAACATGGAGCCCGCACGAAAGGGGTTGTC 19508490 Query 10636 GCAGGCGGACACCCGCGGGGACGCGCTGACGCACCTGACGCTGCGCG-CCGTCCGCGAGG 10694 |||||| ||| | | | ||| | || | ||||| || ||| | || ||||| | Sbjct 19508489 GCAGGCCGACTCTCCTCAAGCTGCGGTCACCAAGCTGAC-CTTGGCGACAGTGCGCGAAG 19508431 Query 10695 TGGAGAACGCAGGCCGCCAGCAGATCATCCACGCCGTCGAGAACGACCC 10743 |||||| ||||| |||| ||||||||| ||| ||| |||||||||| Sbjct 19508430 TGGAGATGGCAGGTCGCCGACAGATCATCGGCGCTGTCAAGAACGACCC 19508382 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 171469198147520