Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_031121.1 Length=25908 Score E Sequences producing significant alignments: (Bits) Value seq494 89.7 9e-14 >seq494 Length=34644 Score = 89.7 bits (98), Expect = 9e-14 Identities = 234/350 (67%), Gaps = 13/350 (4%) Strand=Plus/Minus Query 22293 AAACCAGCTTATCCTTGTGACATCTGGCAGTATACTGAAACAGGTCACACACCGGGAATT 22352 |||||| | ||| |||||||||| ||||| ||||| || | ||| | | || ||| Sbjct 2193 AAACCATCCTATACTTGTGACATTTGGCAATATACCGATAATGGTTATATTGATGGTATT 2134 Query 22353 GGTAA-GTGTGATTTGAATCAATTGATTGGAAATAAGAATTTAGCTTACTTTACCGGACA 22411 || || ||| ||| | ||| |||| || | || | ||| || ||||||||| | Sbjct 2133 GGAAAAGTG-GATATTAATTTATTGCAAGGTGACAAAACGCTAGATTGGTTTACCGGAGA 2075 Query 22412 -AGATGATCAGACGCCAAAAG--GATATCAATATGTAAGAAGTGGTGGATTTGGGTCTAG 22468 | | ||| | || || | | ||||||||||| | | |||||| ||||| | Sbjct 2074 GAAACAATCTGTTGCTAATGGCGGTTATCAATATGTTAAATCTGGTGGTTTTGGTATTTC 2015 Query 22469 TTTAATTAATGAAGTGTCTGCTAAA----ATGATTGAATTAGGAACAAAAGGAAGAGTTA 22524 || || | |||| || ||||| |||| ||| ||||| |||||| ||||| Sbjct 2014 ATTGGTTCAAGAAG---CT-CTAAATGCTATGAATGAGCGTGGAACTAAAGGACAAGTTA 1959 Query 22525 TTTTAAATCCTGAAGAAGGTTTAGCATATATGCAAACAGATGTAATGCCAAATGAAGAAT 22584 ||| ||||| | ||||||||||| ||||||| || || | ||||||| || Sbjct 1958 TTTCTAATCCATTAACTGGTTTAGCATACTTGCAAACCGAAGTGTTACCAAATGGTGAGC 1899 Query 22585 TAGATAAAATAACTTGGTGGATGGATCAACGTGGTTGGTGGTATGAGTAT 22634 | ||||| || || |||||||| || | |||||||| |||||| Sbjct 1898 TTGATAAGATTACAGCTTGGATGGACGAAAGAAACTGGTGGTACGAGTAT 1849 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 82785882855648