Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_031127.1 Length=240761 Score E Sequences producing significant alignments: (Bits) Value seq82 95.1 2e-14 >seq82 Length=657493 Score = 95.1 bits (104), Expect = 2e-14 Identities = 163/237 (69%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 196071 GACCGTACCGGCACGGGCACCATCTCTATTTTCGGGTATCAGATGCGTTTTGACCTGCGC 196130 || ||||| || || ||||| | |||||||| || |||| ||| ||| | | Sbjct 104620 GATCGTACTGGTACAGGCACTTTGTCTATTTTTGGTCATCATATGAAATTTAATTTAAAA 104679 Query 196131 AAAGGGTTCCCGCTGGTCACCACCAAAAAGTTGCACCTGCGATCTATCATCCACGAACTG 196190 ||||| || || || || ||||| ||||| | || | | |||||| || |||||||| Sbjct 104680 AAAGGATTTCCTCTTGTTACCACAAAAAAATGTCATATTCCATCTATTATACACGAACTA 104739 Query 196191 TTGTGGTTCCTGAACGGCGACACCAACATCCAGTATCTGAAAGACAACAACGTCAGTATC 196250 || ||||| | || || || || ||||| | ||||| || | || || | |||| Sbjct 104740 TTATGGTTTTTAAAAGGTGATACTAACATTAAATATCTTAATCAAAATAAAATATCTATC 104799 Query 196251 TGGGATGAGTGGGCAGATGAAGATGGCGATCTTGGCCCCGTCTACGGTAAGCAGTGG 196307 ||| || | |||||||||||| | || || |||| || | || || || || ||| Sbjct 104800 TGGAATAATTGGGCAGATGAACAAGGAGAAGTTGGTCCAATATATGGAAAACAATGG 104856 Score = 91.5 bits (100), Expect = 2e-13 Identities = 61/68 (90%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 5487 CTCTGTAGTTCAGTTGGTAGAACGGTGGACTGTTAATCCATATGTCGCAGGTTCGAGTCC 5546 ||||||||||||||||||||||||| ||||||||||||| |||||| | ||||||| ||| Sbjct 216620 CTCTGTAGTTCAGTTGGTAGAACGGCGGACTGTTAATCCGTATGTCACTGGTTCGAATCC 216561 Query 5547 TGCCAGAG 5554 | ||||| Sbjct 216560 AGTCAGAG 216553 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 770293950716160