Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_031129.1 Length=103445 Score E Sequences producing significant alignments: (Bits) Value seq82 410 8e-110 seq1311 264 7e-66 seq1048 82.4 5e-11 >seq82 Length=657493 Score = 410 bits (454), Expect = 8e-110 Identities = 876/1299 (67%), Gaps = 12/1299 (1%) Strand=Plus/Minus Query 96700 ATAGTTATCAAACCGTGAGTATTGGCCGTTAAAAGCCAATCTCACCGTGCCAATTGGGCC 96759 ||| |||||||| | || | || || || |||| ||| | || |||||||| || || Sbjct 208087 ATAATTATCAAATCTAGACCAGTGTCCATTGAAAGTCAAACAAACTGTGCCAATAGGACC 208028 Query 96760 ATTTCGTTGCTTTCCGATAATTACCTCGGCAATGCCCTTCATTTCGCTATCCGGGTGATA 96819 ||||| ||| ||||| || || | || || || || || | || |||| ||||| Sbjct 208027 ATTTCTTTGTTTTCCTATTATAATTTCTGCTATTCCTTTGAAATCACTATTTTCATGATA 207968 Query 96820 AACTTCGTCGCGATACAAAAACATGATCAGGTCTGCGTCCTGCTCAATTGCTCCTGATTC 96879 || ||| |||||||| | ||||| || | ||| || || || || | | |||||||| Sbjct 207967 AATTTCATCGCGATATATGAACATTATTAAGTCAGCATCTTGTTCCAAAGAACCTGATTC 207908 Query 96880 ACGTAAATCTGAATTTACCGGTCGTTTGTCCGCACGCTGTTCAAGCGATCGATTAAGTTG 96939 ||||||||||||||| || |||| ||| || | | ||||| | || || || ||||| Sbjct 207907 ACGTAAATCTGAATTGACAGGTCTTTTATCAGATCTTTGTTCTAAAGAACGGTTCAGTTG 207848 Query 96940 TGACAATGCCACCACCGGTACTTGTAATTCCTTCGCCAACGCCTTCAGTGAGCGAGAAAT 96999 ||| | ||| | || |||||||||||||| || || | || || || | | ||| || Sbjct 207847 TGAGAGTGCAATAACTGGTACTTGTAATTCTTTTGCAAGTGCTTTTAGAGTCCTAGATAT 207788 Query 97000 CTCGGCAATTTCCAGCGTTCGGTTATCTTGCAGCTCCGGGACGCGCATAAGTTGCAGGTA 97059 || |||||||| || || || || || || || || | ||| ||||| | || Sbjct 207787 TTCTGCAATTTCTAGTGTACGATTTTCAGATAGAGATGGTACTCTCATTAGTTGTAAATA 207728 Query 97060 GTCGATCATAATCATGCTCAAACCACCATTTTCTTTATAAACACGACGAGCGCGGGAACG 97119 || | ||| || | | | || |||||| |||| ||||||||| | ||||| Sbjct 207727 ATCTACCATTATTAAAGTTAGCCCGTTATTTTCACGGTAAATACGACGAGCTCTTGAACG 207668 Query 97120 TAGCTCTGTCGGCGTCAGGGCGCTTGAGTCATCAATAAAAATATTCTGCTTGTCCAACAG 97179 | || | || || | || |||||||||||| | ||||||| || | | || Sbjct 207667 AACTTCATTAGGAGTTAATGCTGAAGAGTCATCAATATATATATTCTTTTTTTTAAGTAG 207608 Query 97180 AATACCCATTGCGCCAGAAACCCGCGCCCAATCCTCGTCGTTAAGTTGCCCTGTTCGAAT 97239 | || | ||||| | || | |||||| || ||||| ||||| || || ||||| Sbjct 207607 TACGTTAATAGTACCAGACATGCGTGACCAATCTTCATCGTTTAGTTGTCCAGTACGAAT 207548 Query 97240 ACGAGTCTGATCAACGCGTGCAAGAGAAGCCAGTGAGCGCATCATCAGCTGGTGGCTCGG 97299 || | |||| ||| | | | || || | |||||||| | || | | || Sbjct 207547 TCGTGCTTGATTAACTCTAGATAATGATGCTAACATCCGCATCATAATTTGTTCTCCTGG 207488 Query 97300 CATCTCAAGGCTAAAAACCAATACGGGCTTATCGTTACGAACTGCGGCATTTTCGACGAG 97359 ||| || | ||||||| ||||| || ||||| | | | | ||| |||||||| | Sbjct 207487 CATTTCTAAACTAAAAATTAATACTGGTTTATCATAAAGCATTGCAGCATTTTCACATAA 207428 Query 97360 ATTCATCGCAAACGTGGTCTTCCCCATAGATGGGCGGGCGGCGACAATGATGAGATCGGA 97419 |||||| ||||| || || || ||||||||||| | ||||| | ||| || || || || Sbjct 207427 ATTCATTGCAAATGTTGTTTTTCCCATAGATGGTCTTGCGGCAATAATAATTAGTTCAGA 207368 Query 97420 CGACTGAAGCCCTGCCGTCTTCTTATTGAGATC--GGTAAATCCGGTATCAAGTCCCGTT 97477 || | |||| ||| || ||||| | ||| ||| |||| |||| || ||| ||| Sbjct 207367 ACGTTGTAAACCTGACGTTTTTTTATTTAAATCTTGGT--ATCCTGTATTAATTCCAGTT 207310 Query 97478 ACACCATCATGCGGTCGCTGAAACAACTCTTCTATGCGAGATACCGTTGCATCGAGAATG 97537 || |||||||| ||| |||| || | |||||| | || || ||| |||| || || Sbjct 207309 ACTCCATCATGTGGTGATAGAAATAATTTTTCTATACTAGCCACAGTTTCATCAAGTATT 207250 Query 97538 CTGGCGATATCTTTTGGACCACTACCGCTCTTTT--GTCGTTTTTCAGCTATTTCAAAAA 97595 | | | ||| |||| || || |||| |||||||| || |||| || | Sbjct 207249 TGTTCTACGTTTTTAGGAC--CTGAGTCTTTTTTAAAACGTTTTTCTGCAATTTTGAATA 207192 Query 97596 CGCGGCGTTCGGCCATATCCAGCAATTCATTGCTGCCCCGGCCATCCTGCGCATATCCAG 97655 | | ||| || ||| || | ||| | || || || | | ||||||||| Sbjct 207191 CACTAGATTCTGCATAATCTAGTAGTTCTTCACTTTTTCGTCCTTGCGTGTCATATCCAG 207132 Query 97656 CTTCAGCTATTTCATTTGCGACGGAAATCATTTCACGAACAACCGCGCGTTCACGAACGA 97715 | | |||||||| |||||| || | |||||||| | || | || ||||| | || | Sbjct 207131 CATTAGCTATTTTATTTGCTACTAATATCATTTCTCTGACTATTGCACGTTCTCTTACTA 207072 Query 97716 TATCCGCATAAGCACAAATATTTGCCGCGCTGGGCGTGTTCTTTGACATCTCCGCAAGGT 97775 | || ||||| ||| ||||||||| | ||| || ||||| ||||||| || || | | Sbjct 207071 TGTCTGCATATGCAGTAATATTTGCTGTGCTAGGAGTGTTTTTTGACAGTTCAGCTAAAT 207012 Query 97776 ACGCAAAACCACCGGCGCGTTCTAATTTACCGTTCTGTTCAAGTGCTTCAGCAAGTGTTA 97835 | | ||| | ||| ||| |||||| ||||| || ||||| | | ||||| || |||| Sbjct 207011 AAGAAAATCTACCTACGCTTTCTAACTTACCTTTTTGTTCTAAAGATTCAGATAGGGTTA 206952 Query 97836 TCAAATCAATCGGTTTGCCATGACTTAATAA-CCTCTCCATCTCACTGAAA-ATTTCACG 97893 | |||||||| || | || | | | || || | | ||| || ||||| ||| ||| Sbjct 206951 TTAAATCAATAGGATATCC-TAAATCAAGAAGTTTTTGCATTTC-TTGAAATATTAAACG 206894 Query 97894 ATGAGCATTGGTATAAAAATCATCAGCAACTATACGATCTGCCACTTCATCCCAGCGGCA 97953 ||||| || || |||||||||| ||||| | | | |||| ||| |||||| | Sbjct 206893 ATGAGGCTTACTAAAAAAATCATCGGCAACAACATGTTCTGAAACTGTATCCCATTGTTC 206834 Query 97954 GTTATCAAGCATTAAGCCACCAAGTACAGCTTGTTCTGC 97992 ||||| | ||| || || || | ||||| ||||||||| Sbjct 206833 ATTATCTAACATCAAACCGCCTAATACAGATTGTTCTGC 206795 Score = 105 bits (116), Expect = 4e-18 Identities = 220/325 (68%), Gaps = 2/325 (1%) Strand=Plus/Plus Query 44714 CATTTGCATGGTGCCGCCCTGGCTGACGATAATTTCCGTCGTGTAACGTTCTACACCGGC 44773 ||||||||| || || || | || | |||||| || ||||| ||||||| ||| Sbjct 205868 CATTTGCATTGTACCTCCAATATTTACAACAATTTCTGTAGTGTAGCGTTCTAAACCATT 205927 Query 44774 GTCATCTGTCCACTTACGGGTTTTAAGTTTCCCTTCGATGTAGACCTGAGAACCTTTTCG 44833 | ||| ||| || | |||| | | ||||| || || || |||||||||||||| Sbjct 205928 TTGATCCTGCCATTTTCTAGTTTGCAATGATCCTTCAATATATACTTGAGAACCTTTTCG 205987 Query 44834 TAAATACTCACTCGCAATTTCAGCAAGTTTTCCGAACAAAACGACTTTATGCCATTCTGT 44893 | ||| || | ||||||||||| | ||| || || ||||| | | |||||||||| || Sbjct 205988 AAGATATTCGCCTGCAATTTCAGCTAATTTACCAAATAAAACTATTCTATGCCATTCAGT 206047 Query 44894 TTGCTCTTTCTGTTGGCCCGTTTGCTTGTCGCGCCATGATTCATTCGTTGCGATGCTGAG 44953 || ||||| | || || || | || || ||| ||| ||||| | | | Sbjct 206048 TTTTTCTTTATTTTCTCCAGTATTTTTATCTTTCCAATTTTCTGAAGTTGCTAATGTCA- 206106 Query 44954 TCTTC-CGACCGCTCCGCCATTTGGTATATACCTGATCTCCGGGTCTTGCCCCAGGGTAC 45012 | ||| | ||||| ||||| || ||||| | | || || ||||| || | | Sbjct 206107 TATTCACTACCGCATTACCATTAGGCATATAACGAACTTCAGGATCTTGACCTAAATGCC 206166 Query 45013 CAATCAGGATGACTTTGTTTACACC 45037 ||||||| || ||||| |||||||| Sbjct 206167 CAATCAGAATAACTTTATTTACACC 206191 Score = 96.9 bits (106), Expect = 2e-15 Identities = 68/78 (87%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 98319 TGGCCCCTACCGGACTTGAACCGGTGACCGTGCGATTATGAGTCGCCAGCTCTAACCACT 98378 |||||||| | ||| ||||||| | |||| |||||||||||||||| ||||| |||||| Sbjct 216844 TGGCCCCTGCTGGATTTGAACCAGCGACCAAGCGATTATGAGTCGCCTGCTCTTACCACT 216785 Query 98379 GAGCTAAAGGGCCGGATT 98396 |||||||||||||| ||| Sbjct 216784 GAGCTAAAGGGCCGTATT 216767 >seq1311 Length=2202 Score = 264 bits (292), Expect = 7e-66 Identities = 1049/1631 (64%), Gaps = 30/1631 (2%) Strand=Plus/Plus Query 59237 TCGATCCGCAGGTCGGACTCGTGGTACAGCAGGCCGTCGAGCACATAGGTGGAATCGCGG 59296 ||||| || | || |||||||| |||||||| || || || |||||||| ||||| || Sbjct 1 TCGATGCGTAAATCAGACTCGTGATACAGCAGCCCATCAAGAACATAGGTTGAATCACGA 60 Query 59297 ACGCCGACATTCACCACGCGGGTGCTGAACGGCGCGTACTGGTCGGAGATATGGGTATAG 59356 ||||| ||||| | || |||| || || ||||| || || || || || ||||| Sbjct 61 ACGCCCACATTGATCAGCTTACTGCTAAATGGTGCGTATTGATCAGAAATGTGTGTATAA 120 Query 59357 AACAGCCGTCCCGGCTCGCTACCGTACTTCGGGTTGACGTGCCCGGTGCTCTCGCCCCGG 59416 || | || ||| ||||| || || || || |||| || || || || || | | | Sbjct 121 AATAACCTTCCAGGCTCTGCGCCATATTTTGGATTGATATGTCCTGTACTTTCAGCTCTG 180 Query 59417 CCACCCGCGCGGAAGCGCTGGCCATCGGAGGATGAGGTCGTGCCGTCGCCCCAGTGGGCG 59476 ||||| ||||||||||| |||||||| || || ||||| ||||| || ||||||| | Sbjct 181 CCACCTGCGCGGAAGCGTTGGCCATCTGATGAGGAGGTAGTGCCATCTCCCCAGTTTTCA 240 Query 59477 GC-AAAGG-CGTGGCGATACTGGTGGTTGACCAGCTCGGCCAAGGCCGCCGAATAGGTTT 59534 || ||||| || | || || || |||| |||||||| |||| ||||| |||| Sbjct 241 GCGAAAGGTTGTTTCAAT--TGAGCATTCACCAATTCGGCCAATGCCGTTGAATAAGTTT 298 Query 59535 CGTCGCGGATGTGCCAGGCTTGCAGCCAGGACAGCTTGGCGTAGGTCAGGCCGGGGCTCG 59594 | || ||||| ||||| || || ||||| || || ||||| || || || || | | Sbjct 299 CATCACGGATATGCCAAGCCTGTAGCCATGAGAGTTTGGCATAAGTTGTACCAGGACATG 358 Query 59595 ACTCGGCCATCTTGGTCAGCCCGAGGTTGATCGCATCACCGAGGATTGCGGACAGCAGCA 59654 | |||||||| || |||||||| | || || |||||| | || || | | |||| | Sbjct 359 ATTCGGCCATTTTCGTCAGCCCTAAATTAATTGCATCAGCCAGTATGGTCGTGAGCAATA 418 Query 59655 ACGTCCTGTCTTTGGCCTCGGC-CCCGTCCTTCAAGTGGGTGAAGTGGCGGCTGAAGCCC 59713 ||| | || || || | | |||| ||||| || |||||||| || | ||||| Sbjct 419 ACGCTTTATCCTTCGCAGTGTCATCCGT-TTTCAAATGAGTGAAGTGTCGAGTAAAGCCT 477 Query 59714 GTCCAGTCGTCCACGTCCATCAGCAGTTCGGTGATCTTGATGCGCGGCAGTAAC-TGGCT 59772 ||||| || || || ||||| | | ||||||||||||||| | || | | | | ||| Sbjct 478 GTCCATTCATCGACCTCCATTAATAATTCGGTGATCTTGATATGTGGTAACAGCATTGCT 537 Query 59773 GGTTTGGTCGATCAGCGCCTGCGCCCGATCCGGCACCGCCGCATCCAGCGGGGTGATTTT 59832 |||||||| || | | || || ||| || || | ||||| || || || ||||| Sbjct 538 -GTTTGGTCAATTAAAGTTTGGGCTGTATCAGGAGCCACGGCATCGAGAGGTGTTATTTT 596 Query 59833 CAGCCCTGACTCGGTGAGGATGGCATCGGGCAGCTCGTTGTCCTTGGCCAGGCGGGTGAC 59892 || || || | ||| || ||||| |||| |||||| | |||| ||| | | Sbjct 597 TAGACCAGATTGATTGATCATCGCATCAGGCAAATCGTTGGTCGCTGCCATGCGATTAAT 656 Query 59893 GGTGGCCAACTGCTCGTCCAGCAGCTGCAA-ACGCTCTTCCAGGTACTGGTCGCTGTTCG 59951 | | || || | || |||| || || || || || || || | || | | | Sbjct 657 GATTGCTAATTTCTGCTCCAATAG-TGAAAGGCGACTTTGCAAATATAGATCACAATCAG 715 Query 59952 GGTTGATCGCCAGGGGCA------GGGCCTGCTCGCGCTTGAGTGCGGCGAACTTCTCGG 60005 | || | || || | || ||| | || ||| | || || || | Sbjct 716 TAGTAATGGTTAGAGGTAACTCATTGGACTGTTTTAGC-TGATT-----AAATTTATCAG 769 Query 60006 CCGGCAGCAGGTAGTCGTCGAAGTCGCGGAACTGCCGCGAGCCCTTGACCCAGATGTCGC 60065 | | || | || || |||||||| ||| || || ||||| | ||||||| || | Sbjct 770 CAGTCACTAAATACTCATCGAAGTCTTTGAATTGGCGAGAGCCTTGTACCCAGAGATCCC 829 Query 60066 CGGAGCGCAGGGCGTTCTTCAGCTCGGACAGGGCGCAGATTTCGTAGAATTTCCGGTCGA 60125 | | || || | ||| || || || || | | || |||||||| | || || | Sbjct 830 CAGCCCGTAGCGAGTTTTTAAGTTCAGATAACACACATATTTCGTAATAGCGGCGATCAA 889 Query 60126 GGCCTTCCGGGGTGATCACCAGCGGCTT--CCAGCGCGGCTTGATGAAGGCCGTGGGTGC 60183 || || ||| | || | | ||| ||| || ||||| || || | || || Sbjct 890 TACCATCATCGGTAAAGACTA--GTCTTGCCCACCGTTTTTTGATAAACGCTATTGGAGC 947 Query 60184 ATCGGCCGGCACCTTGCGCAGGTTGTCGGCGTTCATCTCACGCAGGGTCTGCACGGCTGC 60243 || | || | || || || || | ||||| || || || || || || Sbjct 948 ATTAGAGGGGATTTTTCGTGTATTATCAACATTCATGCTGCGGAGCAACTCTACAGCGGC 1007 Query 60244 CAGCACGCCTTGCGCGGCCGGCGCGGCGCGCAGTTCCAGCACCTCCAGCAAGGCCGGCGT 60303 |||| ||| || || || || || |||| || || | | || | | |||| Sbjct 1008 AAGCATATCTTTTGCTGCTGGGGCAGCACGCAATTTAAGTATGGCAAGAAGTTCTGGCGC 1067 Query 60304 GTAACGGCGCAGGGTGGCGAAGTTCTCGCCGACCAGGTGCAGGTGGTCGAAGCCTTCCGG 60363 ||||||||| | || || || ||||||| | | | | || ||| |||| || Sbjct 1068 GTAACGGCGTAAAGTTGCATAGCTCTCGCCAATTCGTGGTAAAAAATCAAAGTCTTCGGG 1127 Query 60364 CCGGGCCAGCAGCTCGGCCTCGCTGACGCTCTCGGTGAACTCGTCCCAGGGAATCACCGC 60423 | ||||| || ||||| | | || | | || | ||||| | ||| || | Sbjct 1128 TTGCGCCAGTTTTTCTGCCTCAGTAATACTTGCTGCAAAAGCATCCCATGAAATAACAGT 1187 Query 60424 CTCGATGGCGGCATAGGGGTCGCTGCCGCTTTCCTTCGCTTCCAGCAGCGCCTGGCCGAT 60483 |||||||||||| | || || ||||| ||| ||| || || |||| || | ||||| Sbjct 1188 TTCGATGGCGGCAAACGGATCACTGCCATTTTGCTTGGCATCTAGCAAGGCTTTCCCGAT 1247 Query 60484 CCTGGAGTACAGGCGCACCTTGTCGTTGATCGCCTTGCCCTGCT-TCTGGAACTGCTGCT 60542 |||| ||||| ||||||||||||| ||| |||| | || || || |||| Sbjct 1248 AAGCCCATACAAACGCACTTTGTCGTTGATCG-CTTTACCTGATGATTGAAATTGTTGCT 1306 Query 60543 GATGCTTGTGCTTCGCGCCGCTGAACAGCTTGACCAGGATGCGGTCATGCAGATCGACCA 60602 | || || | || ||| || ||||| | | ||||| |||||||| || | | Sbjct 1307 GGTGTTTATTTTTTGCGATAGCAAATAGCTTTCCAATAATGCGATCATGCAGGTCAATAA 1366 Query 60603 GCTCATCGATCACGGTCGCGGTGCTCTCCAGCACCACGGCGGCCAGGGTCGCGTAGCGGC 60662 || ||| | | || || | ||||||| || | || ||| || || || || | Sbjct 1367 TTTCGTCGGTGATCGTGGCCATACTCTCCACAACGATTGCTACCAAAGTGGCATATCGAC 1426 Query 60663 GCTGCGGCTCGAACTTACCGAGGTCTTTGGGCGTCATCTGCCCACCCTCGCGGGCCAGCT 60722 | || | || || | | | || || ||||| |||||||| ||||| || | | Sbjct 1427 GTTGAGATTCAAATCTGGCCAAATCAGCAGGAGTCATTTGCCCACCTTCGCGAGCAATTT 1486 Query 60723 TGAGCAGGCGGTTCTGGTGGATGTGCCGGCCCAGGCCTTCGGGCAAGTCCACCAACTGAA 60782 | || | ||| || || || | ||| || | | |||| || | || | || | Sbjct 1487 TCAGTAAGCGATTTTGATGAACGTGTTTTCCAATGTCTTCAGGTAGATCGATGGCTTGTA 1546 Query 60783 ATGTCTTCAGCCGCTCGATGTGTTCCAGCATGTGCCGAGAGTTGGGTTTCAGC-GGTGCC 60841 | |||||||||||| ||||| || ||||||| | ||||| ||||| ||| |||| | Sbjct 1547 AGCACTTCAGCCGCTCAATGTGCTCAAGCATGTACTTTGAGTTTGGTTT-AGCTGGTGAC 1605 Query 60842 TGGCGCAGCCA 60852 || | ||||| Sbjct 1606 TGTCTAAGCCA 1616 >seq1048 Length=3623 Score = 82.4 bits (90), Expect = 5e-11 Identities = 72/90 (80%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 32403 TTCGCGTATGTATCCAGTATCCCGTCACCGTTCTGTTTAAAACCGGTATCGTTATCACCG 32462 || ||||| |||||| || || || |||||||||||||| ||||| || || ||||| Sbjct 988 TTGGCGTAAACATCCAGAATGCCATCTCCGTTCTGTTTAAAGCCGGTGTCATTGTCACCC 1047 Query 32463 AGTACAATTGAATTACCGCCCAGTGCATTG 32492 || ||||| ||||||||||| || ||||| Sbjct 1048 AGAACAATGGAATTACCGCCAAGACCATTG 1077 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 330893650820416